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Report for CCDS46150.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46150.1 Public Homo sapiens 19 SIGLEC11 24 110 108 CCDS HistoryNCBI Gene:114132Re-query CCDS DB by CCDS ID:46150.1Re-query CCDS DB by GeneID:114132See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 46150.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000426971.2 ENSP00000398891.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000426971.2Link to Ensembl Protein Viewer:ENSP00000398891.2Re-query CCDS DB by Nucleotide ID:ENST00000426971Re-query CCDS DB by Protein ID:ENSP00000398891
Original member Current member NCBI NM_001135163.1 NP_001128635.1 Accepted alive Link to Nucleotide Sequence:NM_001135163.1Link to Protein Sequence:NP_001128635.1Re-query CCDS DB by Nucleotide ID:NM_001135163Re-query CCDS DB by Protein ID:NP_001128635Link to BLAST:NP_001128635.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001128635.1 602 Q96RL6-2 602 100% 0 0

Chromosomal Locations for CCDS 46150.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 49949970 49950236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49951891 49951972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49952298 49952394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49958643 49958900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49959030 49959077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49959360 49959623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49959773 49959820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49960137 49960421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49960552 49960935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49961006 49961081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1809 nt):
ATGGTCCCGGGACAGGCCCAGCCCCAGAGCCCAGAGATGCTGCTGCTGCCCCTGCTGCTGCCCGTGCTGG
GGGCGGGGTCCCTGAACAAGGATCCCAGTTACAGTCTTCAAGTGCAGAGGCAGGTGCCGGTGCCGGAGGG
CCTGTGTGTCATCGTGTCTTGCAACCTCTCCTACCCCCGGGATGGCTGGGACGAGTCTACTGCTGCTTAT
GGCTACTGGTTCAAAGGACGGACCAGCCCAAAGACGGGTGCTCCTGTGGCCACTAACAACCAGAGTCGAG
AGGTGGAAATGAGCACCCGGGACCGATTCCAGCTCACTGGGGATCCCGGCAAAGGGAGCTGCTCCTTGGT
GATCAGAGACGCGCAGAGGGAGGATGAGGCATGGTACTTCTTTCGGGTGGAGAGAGGAAGCCGTGTGAGA
CATAGTTTCCTGAGCAATGCGTTCTTTCTAAAAGTAACAGCCCTGACTAAGAAGCCTGATGTCTACATCC
CCGAGACCCTGGAGCCCGGGCAGCCGGTGACGGTCATCTGTGTGTTTAACTGGGCTTTCAAGAAATGTCC
AGCCCCTTCTTTCTCCTGGACGGGGGCTGCCCTCTCCCCTAGAAGAACCAGACCAAGCACCTCCCACTTC
TCAGTGCTCAGCTTCACGCCCAGCCCCCAGGACCACGACACCGACCTCACCTGCCATGTGGACTTCTCCA
GAAAGGGTGTGAGCGCACAGAGGACCGTCCGACTCCGTGTGGCCTATGCCCCCAAAGACCTTATTATCAG
CATTTCACATGACAACACGTCAGCCCTGGAACTCCAGGGAAACGTCATATATCTGGAAGTTCAGAAAGGC
CAGTTCCTGCGGCTCCTCTGTGCTGCTGACAGCCAGCCCCCTGCCACGCTGAGCTGGGTCCTGCAGGACA
GAGTCCTCTCCTCGTCCCACCCCTGGGGCCCCAGAACCCTGGGGCTGGAGCTGCGTGGGGTAAGGGCCGG
GGATTCAGGGCGCTACACCTGCCGAGCGGAGAACAGGCTTGGCTCCCAGCAGCAAGCCCTGGACCTCTCT
GTGCAGTATCCTCCAGAGAACCTGAGAGTGATGGTTTCCCAAGCAAACAGGACAGTCCTGGAAAACCTCG
GGAACGGCACATCCCTCCCGGTCCTGGAGGGCCAAAGCCTGCGCCTGGTCTGTGTCACCCACAGCAGCCC
CCCAGCCAGGCTGAGCTGGACCCGGTGGGGACAGACCGTGGGCCCCTCCCAGCCCTCAGACCCCGGGGTC
CTGGAGCTGCCACCCATTCAAATGGAGCACGAAGGAGAGTTCACCTGCCACGCTCAGCACCCTCTGGGCT
CCCAGCACGTCTCTCTCAGCCTCTCCGTGCACTGGAAGCTGGAGCATGGGGGAGGACTTGGCCTGGGGGC
TGCCCTGGGAGCTGGCGTCGCTGCCCTGCTCGCTTTCTGTTCCTGCCTTGTCGTCTTCAGGGTGAAGATC
TGCAGGAAGGAAGCTCGCAAGAGGGCAGCAGCTGAGCAGGACGTGCCCTCCACCCTGGGACCCATCTCCC
AGGGTCACCAGCATGAATGCTCGGCAGGCAGCTCCCAAGACCACCCGCCCCCAGGTGCAGCCACCTACAC
CCCGGGGAAGGGGGAAGAGCAGGAGCTCCACTATGCCTCCCTCAGCTTCCAGGGCCTGAGGCTCTGGGAG
CCTGCGGACCAGGAGGCCCCCAGCACCACCGAGTACTCGGAGATCAAGATCCACACAGGACAGCCCCTGA
GGGGCCCAGGCTTTGGGCTTCAATTGGAGAGGGAGATGTCAGGGATGGTTCCAAAGTGA

Translation (602 aa):
MVPGQAQPQSPEMLLLPLLLPVLGAGSLNKDPSYSLQVQRQVPVPEGLCVIVSCNLSYPRDGWDESTAAY
GYWFKGRTSPKTGAPVATNNQSREVEMSTRDRFQLTGDPGKGSCSLVIRDAQREDEAWYFFRVERGSRVR
HSFLSNAFFLKVTALTKKPDVYIPETLEPGQPVTVICVFNWAFKKCPAPSFSWTGAALSPRRTRPSTSHF
SVLSFTPSPQDHDTDLTCHVDFSRKGVSAQRTVRLRVAYAPKDLIISISHDNTSALELQGNVIYLEVQKG
QFLRLLCAADSQPPATLSWVLQDRVLSSSHPWGPRTLGLELRGVRAGDSGRYTCRAENRLGSQQQALDLS
VQYPPENLRVMVSQANRTVLENLGNGTSLPVLEGQSLRLVCVTHSSPPARLSWTRWGQTVGPSQPSDPGV
LELPPIQMEHEGEFTCHAQHPLGSQHVSLSLSVHWKLEHGGGLGLGAALGAGVAALLAFCSCLVVFRVKI
CRKEARKRAAAEQDVPSTLGPISQGHQHECSAGSSQDHPPPGAATYTPGKGEEQELHYASLSFQGLRLWE
PADQEAPSTTEYSEIKIHTGQPLRGPGFGLQLEREMSGMVPK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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