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Report for CCDS4613.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4613.1 Public Homo sapiens 6 BTN2A1 24 110 108 CCDS HistoryNCBI Gene:11120Re-query CCDS DB by CCDS ID:4613.1Re-query CCDS DB by GeneID:11120See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4613.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000312541.10 ENSP00000312158.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000312541.10Link to Ensembl Protein Viewer:ENSP00000312158.5Re-query CCDS DB by Nucleotide ID:ENST00000312541Re-query CCDS DB by Protein ID:ENSP00000312158
Original member Current member NCBI NM_007049.5 NP_008980.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_007049.5Link to Protein Sequence:NP_008980.1Re-query CCDS DB by Nucleotide ID:NM_007049Re-query CCDS DB by Protein ID:NP_008980Link to BLAST:NP_008980.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_008980.1 527 Q7KYR7-2 527 100% 0 0

Chromosomal Locations for CCDS 4613.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 26458637 26458718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 26459481 26459828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 26463244 26463525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 26465185 26465406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 26465953 26465973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 26466062 26466088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 26467948 26468549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1584 nt):
ATGGAATCAGCTGCTGCCCTGCACTTCTCCCGGCCAGCCTCCCTCCTCCTCCTCCTCCTCAGCCTGTGTG
CACTGGTCTCAGCCCAGTTTATTGTCGTGGGGCCCACTGATCCCATCTTGGCCACGGTTGGAGAAAACAC
TACGTTACGCTGCCATCTGTCACCCGAGAAAAATGCTGAGGACATGGAGGTGCGGTGGTTCCGGTCTCAG
TTCTCCCCCGCAGTGTTTGTGTATAAAGGTGGCAGAGAGAGAACAGAGGAGCAGATGGAGGAGTACCGAG
GAAGAACCACCTTTGTGAGCAAAGACATCAGCAGGGGCAGCGTGGCCCTGGTCATACACAACATCACAGC
CCAGGAAAACGGCACCTACCGCTGTTACTTCCAAGAAGGCAGGTCCTACGATGAGGCCATCCTGCACCTC
GTAGTGGCAGGACTAGGCTCTAAGCCCCTCATTTCAATGAGGGGCCATGAAGACGGGGGCATCCGGCTGG
AGTGCATATCTAGAGGGTGGTACCCAAAGCCCCTCACAGTGTGGAGGGACCCCTACGGTGGGGTTGCGCC
TGCCCTGAAAGAGGTCTCCATGCCTGATGCAGACGGCCTCTTCATGGTCACCACGGCTGTGATCATCAGA
GACAAGTCTGTGAGGAACATGTCCTGCTCTATCAACAACACCCTGCTCGGCCAGAAGAAAGAAAGTGTCA
TTTTTATTCCAGAATCCTTTATGCCCAGTGTGTCTCCCTGTGCAGTGGCCCTGCCTATCATTGTGGTTAT
TCTGATGATACCCATTGCCGTATGCATCTATTGGATCAACAAACTCCAAAAGGAAAAAAAGATTCTGTCA
GGGGAAAAGGAGTTTGAACGGGAAACAAGAGAAATTGCTCTAAAGGAACTGGAGAAAGAACGTGTGCAAA
AAGAGGAAGAACTTCAAGTAAAAGAGAAACTTCAAGAAGAATTGCGATGGAGAAGAACATTCTTACATGC
TGTTGATGTGGTCCTGGATCCAGACACCGCTCATCCCGATCTCTTCCTGTCAGAGGACCGGAGAAGTGTG
AGAAGGTGCCCCTTCAGGCACCTAGGGGAGAGCGTGCCTGACAACCCAGAGAGATTCGACAGTCAGCCTT
GTGTCCTAGGCCGGGAGAGCTTCGCTTCAGGGAAACATTACTGGGAGGTGGAGGTGGAAAACGTGATTGA
GTGGACTGTGGGGGTCTGTAGAGACAGTGTTGAGAGGAAAGGGGAGGTCCTGCTGATTCCTCAGAATGGC
TTCTGGACCTTGGAGATGCATAAAGGGCAATACCGGGCCGTGTCCTCCCCTGATAGGATTCTCCCTTTGA
AGGAGTCCCTTTGCCGGGTGGGCGTCTTCCTGGACTATGAAGCTGGAGATGTCTCCTTCTACAACATGAG
GGACAGATCGCACATCTACACATGTCCCCGTTCAGCCTTTTCCGTGCCTGTGAGGCCCTTCTTCAGGTTG
GGGTGTGAGGACAGCCCCATCTTCATCTGCCCTGCACTCACAGGAGCCAATGGGGTCACGGTGCCTGAAG
AGGGCCTGACACTTCACAGAGTGGGGACCCACCAGAGCCTATAG

Translation (527 aa):
MESAAALHFSRPASLLLLLLSLCALVSAQFIVVGPTDPILATVGENTTLRCHLSPEKNAEDMEVRWFRSQ
FSPAVFVYKGGRERTEEQMEEYRGRTTFVSKDISRGSVALVIHNITAQENGTYRCYFQEGRSYDEAILHL
VVAGLGSKPLISMRGHEDGGIRLECISRGWYPKPLTVWRDPYGGVAPALKEVSMPDADGLFMVTTAVIIR
DKSVRNMSCSINNTLLGQKKESVIFIPESFMPSVSPCAVALPIIVVILMIPIAVCIYWINKLQKEKKILS
GEKEFERETREIALKELEKERVQKEEELQVKEKLQEELRWRRTFLHAVDVVLDPDTAHPDLFLSEDRRSV
RRCPFRHLGESVPDNPERFDSQPCVLGRESFASGKHYWEVEVENVIEWTVGVCRDSVERKGEVLLIPQNG
FWTLEMHKGQYRAVSSPDRILPLKESLCRVGVFLDYEAGDVSFYNMRDRSHIYTCPRSAFSVPVRPFFRL
GCEDSPIFICPALTGANGVTVPEEGLTLHRVGTHQSL


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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