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Report for CCDS4612.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4612.2 Public Homo sapiens 6 BTN3A3 24 110 108 CCDS HistoryNCBI Gene:10384Re-query CCDS DB by CCDS ID:4612.2Re-query CCDS DB by GeneID:10384See the combined annotation on chromosome 6 in Sequence Viewer

Public Note for CCDS 4612.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 4612.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361232.7 ENSP00000355238.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000361232.7Link to Ensembl Protein Viewer:ENSP00000355238.3Re-query CCDS DB by Nucleotide ID:ENST00000361232Re-query CCDS DB by Protein ID:ENSP00000355238
Original member Current member NCBI NM_197974.3 NP_932078.2 Accepted alive Link to Nucleotide Sequence:NM_197974.3Link to Protein Sequence:NP_932078.2Re-query CCDS DB by Nucleotide ID:NM_197974Re-query CCDS DB by Protein ID:NP_932078Link to BLAST:NP_932078.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_932078.2 535 O00478-2 535 100% 0 0

Chromosomal Locations for CCDS 4612.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 26443998 26444304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 26445704 26445985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 26448248 26448448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 26448728 26448754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 26449662 26449688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 26450107 26450133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 26451675 26452411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1608 nt):
ATGGTGGGTGAAGACGCTGATCTGCCCTGTCACCTGTTCCCGACCATGAGTGCAGAGACCATGGAGCTGA
GGTGGGTGAGTTCCAGCCTAAGGCAGGTGGTGAACGTGTATGCAGATGGAAAGGAAGTGGAAGACAGGCA
GAGTGCACCGTATCGAGGGAGAACTTCGATTCTGCGGGATGGCATCACTGCAGGGAAGGCTGCTCTCCGA
ATACACAACGTCACAGCCTCTGACAGTGGAAAGTACTTGTGTTATTTCCAAGATGGTGACTTCTACGAAA
AAGCCCTGGTGGAGCTGAAGGTTGCAGCATTGGGTTCTGATCTTCACATTGAAGTGAAGGGTTATGAGGA
TGGAGGGATCCATCTGGAGTGCAGGTCCACTGGCTGGTACCCCCAACCCCAAATAAAGTGGAGCGACACC
AAGGGAGAGAACATCCCGGCTGTGGAAGCACCTGTGGTTGCAGATGGAGTGGGCCTGTATGCAGTAGCAG
CATCTGTGATCATGAGAGGCAGCTCTGGTGGGGGTGTATCCTGCATCATCAGAAATTCCCTCCTCGGCCT
GGAAAAGACAGCCAGCATATCCATCGCAGACCCCTTCTTCAGGAGCGCCCAGCCCTGGATCGCGGCCCTG
GCAGGGACCCTGCCTATCTCGTTGCTGCTTCTCGCAGGAGCCAGTTACTTCTTGTGGAGACAACAGAAGG
AAAAAATTGCTCTGTCCAGGGAGACAGAAAGAGAGCGAGAGATGAAAGAAATGGGATACGCTGCAACAGA
GCAAGAAATAAGCCTAAGAGAGTGGAGGAAAATCCAGTACATGGCTCGTGGAGAGAAGTCTTTGGCCTAT
CATGAATGGAAAATGGCCCTCTTCAAACCTGCGGATGTGATTCTGGATCCAGACACGGCAAACGCCATCC
TCCTTGTTTCTGAGGACCAGAGGAGTGTGCAGCGTGCTGAAGAGCCGCGGGATCTGCCAGACAACCCTGA
GAGATTTGAATGGCGTTACTGTGTCCTTGGCTGTGAAAACTTCACATCAGGGAGACATTACTGGGAGGTG
GAAGTGGGGGACAGAAAAGAGTGGCATATTGGGGTATGTAGTAAGAACGTGGAGAGGAAAAAAGGTTGGG
TCAAAATGACACCGGAGAACGGATACTGGACTATGGGCCTGACTGATGGGAATAAGTATCGGGCTCTCAC
TGAGCCCAGAACCAACCTGAAACTTCCTGAGCCTCCTAGGAAAGTGGGGATCTTCCTGGACTATGAGACT
GGAGAGATCTCGTTCTATAATGCCACAGATGGATCTCATATCTACACCTTTCCGCACGCCTCTTTCTCTG
AGCCTCTATATCCTGTTTTCAGAATTTTGACCTTGGAGCCCACTGCCCTGACCATTTGCCCAATACCAAA
AGAAGTAGAGAGTTCCCCCGATCCTGACCTAGTGCCTGATCATTCCCTGGAGACACCACTGACCCCGGGC
TTAGCTAATGAAAGTGGGGAGCCTCAGGCTGAAGTAACATCTCTGCTTCTCCCTGCCCACCCTGGAGCTG
AGGTCTCCCCTTCTGCAACAACCAATCAGAACCATAAGCTACAGGCACGCACTGAAGCACTTTACTGA

Translation (535 aa):
MVGEDADLPCHLFPTMSAETMELRWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALR
IHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHIEVKGYEDGGIHLECRSTGWYPQPQIKWSDT
KGENIPAVEAPVVADGVGLYAVAASVIMRGSSGGGVSCIIRNSLLGLEKTASISIADPFFRSAQPWIAAL
AGTLPISLLLLAGASYFLWRQQKEKIALSRETEREREMKEMGYAATEQEISLREWRKIQYMARGEKSLAY
HEWKMALFKPADVILDPDTANAILLVSEDQRSVQRAEEPRDLPDNPERFEWRYCVLGCENFTSGRHYWEV
EVGDRKEWHIGVCSKNVERKKGWVKMTPENGYWTMGLTDGNKYRALTEPRTNLKLPEPPRKVGIFLDYET
GEISFYNATDGSHIYTFPHASFSEPLYPVFRILTLEPTALTICPIPKEVESSPDPDLVPDHSLETPLTPG
LANESGEPQAEVTSLLLPAHPGAEVSPSATTNQNHKLQARTEALY


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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