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Report for CCDS46085.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46085.1 Public Homo sapiens 19 ERICH4 24 110 108 CCDS HistoryNCBI Gene:100170765Re-query CCDS DB by CCDS ID:46085.1Re-query CCDS DB by GeneID:100170765See the combined annotation on chromosome 19 in Sequence Viewer

Public Note for CCDS 46085.1
This CCDS representation has an inferred exon combination due to a lack of full-length human transcript support for this gene. The represented two-exon structure is supported by orthologous mouse transcript alignments, and by partial human transcript data for the 3' exon.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 46085.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378187.3 ENSP00000367429.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000378187.3Link to Ensembl Protein Viewer:ENSP00000367429.2Re-query CCDS DB by Nucleotide ID:ENST00000378187Re-query CCDS DB by Protein ID:ENSP00000367429
Original member Current member NCBI NM_001130514.3 NP_001123986.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001130514.3Link to Protein Sequence:NP_001123986.1Re-query CCDS DB by Nucleotide ID:NM_001130514Re-query CCDS DB by Protein ID:NP_001123986Link to BLAST:NP_001123986.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001123986.1 130 A6NGS2 130 100% 0 0

Chromosomal Locations for CCDS 46085.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 41443170 41443343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41444006 41444224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (393 nt):
ATGGAACTGTGGAGGCAGCTGAATCAGGCTGGACTGGTGCCTCCGGGGCTGGGCCCACCCCCCCAGGCCC
TGAGGGAGGTCTCCCCAGTGGAAATCCCTGGTCAGACCCTCAGGACTGCAGGGGCAGACACTGGAGGTGC
CTGCGATAGTCTGCTGTGGATCAGGGAGGAGCTGGGGAACCTGCGCCGAGTGGATGTCCAGCTGCTGGGA
CAGCTGTGCAGCCTGGGGCTGGAGATGGGGGCGCTGCGGGAGGAACTGGTCACCATATTGGAGGAGGAGG
AGGAGAGCAGCAAGGAAGAGGAGGAGGATCAAGAGCCCCAGAGGAAGCAGGAGGAGGAACACCTGGAGGC
CTGCCCAGCCCCACATCCACCTGACTTTGAGATGATGATCTGA

Translation (130 aa):
MELWRQLNQAGLVPPGLGPPPQALREVSPVEIPGQTLRTAGADTGGACDSLLWIREELGNLRRVDVQLLG
QLCSLGLEMGALREELVTILEEEEESSKEEEEDQEPQRKQEEEHLEACPAPHPPDFEMMI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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