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Report for CCDS46079.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46079.1 Public Homo sapiens 19 ZNF780A 24 110 108 CCDS HistoryNCBI Gene:284323Re-query CCDS DB by CCDS ID:46079.1Re-query CCDS DB by GeneID:284323See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46079.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000455521.5 ENSP00000400997.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000455521.5Link to Ensembl Protein Viewer:ENSP00000400997.1Re-query CCDS DB by Nucleotide ID:ENST00000455521Re-query CCDS DB by Protein ID:ENSP00000400997
Original member Current member EBI ENST00000594395.5 ENSP00000469786.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000594395.5Link to Ensembl Protein Viewer:ENSP00000469786.1Re-query CCDS DB by Nucleotide ID:ENST00000594395Re-query CCDS DB by Protein ID:ENSP00000469786
Original member Current member NCBI NM_001142577.2 NP_001136049.1 Accepted alive Link to Nucleotide Sequence:NM_001142577.2Link to Protein Sequence:NP_001136049.1Re-query CCDS DB by Nucleotide ID:NM_001142577Re-query CCDS DB by Protein ID:NP_001136049Link to BLAST:NP_001136049.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001136049.1 642 O75290-3 642 100% 0 0

Chromosomal Locations for CCDS 46079.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 40074516 40076209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40081819 40081917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40083111 40083237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40084745 40084753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1929 nt):
ATGGTCCATGGATCAGTGACATTCAGGGATGTGGCCATTGACTTCTCTCAGGAGGAGTGGGAGTGCCTGC
AGCCTGATCAGAGGACCTTGTACAGGGATGTGATGTTGGAGAACTACAGCCACCTGATCTCACTGGCAGG
AAGTTCCATTTCTAAACCAGATGTAATTACGTTACTAGAGCAAGAGAAAGAGCCCTGGATGGTTGTAAGG
AAAGAAACAAGCAGACGGTATCCAGATTTGGAGTTAAAATATGGACCTGAGAAAGTATCTCCAGAAAATG
ATACCTCTGAAGTAAATTTACCCAAACAGGTTATAAAGCAAATAAGTACAACTCTTGGCATTGAGGCCTT
TTATTTTAGAAATGACTCAGAATATAGACAATTTGAGGGACTACAGGGATATCAAGAAGGAAATATCAAT
CAAAAGATGATCAGCTATGAAAAACTGCCTACTCATACTCCTCATGCTTCTCTTATTTGCAATACACATA
AACCGTATGAATGTAAGGAATGTGGGAAATACTTTAGTCGTAGTGCAAATCTTATTCAGCATCAGAGTAT
TCATACTGGAGAGAAACCCTTTGAATGTAAGGAGTGTGGGAAAGCCTTTCGACTTCACATACAATTTACT
CGACATCAGAAATTTCATACTGGTGAGAAACCTTTTGAATGTAACGAATGTGGAAAGGCCTTTAGTCTTC
TTACCCTGCTTAATCGCCATAAGAACATTCACACAGGTGAGAAACTGTTTGAATGTAAGGAATGTGGGAA
GTCCTTTAATCGTAGCTCAAACCTTGTTCAACATCAGAGTATTCATTCTGGTGTAAAACCATATGAATGT
AAGGAGTGTGGGAAAGGCTTTAATCGTGGTGCACACCTTATTCAGCATCAGAAAATTCATTCCAATGAGA
AACCCTTTGTATGTAAGGAATGTGGGATGGCCTTTCGATATCATTACCAACTTATTGAACATTGCCAAAT
TCATACTGGTGAGAAACCCTTTGAATGTAAAGAATGTGGAAAGGCGTTTACTCTTCTGACAAAGCTTGTT
CGACATCAGAAGATTCATACTGGTGAGAAACCCTTTGAATGCAGGGAATGTGGGAAGGCCTTTAGTCTTC
TCAACCAGCTTAATCGCCATAAGAACATTCACACAGGTGAAAAACCGTTTGAATGTAAGGAATGTGGGAA
GTCCTTTAATCGTAGCTCAAACCTTGTTCAACATCAGAGTATTCATGCTGGTATAAAACCATATGAATGT
AAGGAGTGTGGGAAAGGCTTTAATCGTGGTGCACACCTTATTCAGCATCAGAAAATTCATTCCAATGAGA
AACCTTTTGTATGTAGGGAATGTGAGATGGCCTTTAGATATCATTGCCAACTTATTGAACATTCTCGAAT
TCATACTGGTGACAAGCCATTTGAATGTCAAGACTGTGGGAAGGCCTTCAATCGTGGCTCAAGCCTTGTT
CAACATCAGAGTATTCACACTGGTGAGAAGCCCTATGAATGTAAGGAGTGTGGGAAGGCTTTTAGACTTT
ACCTACAACTTTCCCAACATCAGAAAACTCACACAGGTGAAAAACCATTTGAATGTAAGGAATGTGGGAA
ATTCTTTCGTCGTGGTTCAAATCTTAATCAACATCGAAGTATTCATACTGGAAAGAAACCCTTTGAATGT
AAGGAATGTGGGAAAGCCTTTCGACTTCATATGCACCTTATTCGACATCAGAAATTGCATACTGGTGAGA
AACCCTTTGAATGTAAGGAGTGTGGGAAAGCCTTTCGACTTCATATGCAACTTATTCGACATCAGAAATT
GCATACTGGTGAGAAACCCTTTGAATGTAAGGAATGTGGAAAGGTTTTTAGTCTTCCCACCCAGCTTAAT
CGCCATAAGAACATTCACACAGGTGAGAAGGCATCTTGA

Translation (642 aa):
MVHGSVTFRDVAIDFSQEEWECLQPDQRTLYRDVMLENYSHLISLAGSSISKPDVITLLEQEKEPWMVVR
KETSRRYPDLELKYGPEKVSPENDTSEVNLPKQVIKQISTTLGIEAFYFRNDSEYRQFEGLQGYQEGNIN
QKMISYEKLPTHTPHASLICNTHKPYECKECGKYFSRSANLIQHQSIHTGEKPFECKECGKAFRLHIQFT
RHQKFHTGEKPFECNECGKAFSLLTLLNRHKNIHTGEKLFECKECGKSFNRSSNLVQHQSIHSGVKPYEC
KECGKGFNRGAHLIQHQKIHSNEKPFVCKECGMAFRYHYQLIEHCQIHTGEKPFECKECGKAFTLLTKLV
RHQKIHTGEKPFECRECGKAFSLLNQLNRHKNIHTGEKPFECKECGKSFNRSSNLVQHQSIHAGIKPYEC
KECGKGFNRGAHLIQHQKIHSNEKPFVCRECEMAFRYHCQLIEHSRIHTGDKPFECQDCGKAFNRGSSLV
QHQSIHTGEKPYECKECGKAFRLYLQLSQHQKTHTGEKPFECKECGKFFRRGSNLNQHRSIHTGKKPFEC
KECGKAFRLHMHLIRHQKLHTGEKPFECKECGKAFRLHMQLIRHQKLHTGEKPFECKECGKVFSLPTQLN
RHKNIHTGEKAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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