NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS46077.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46077.1 Public Homo sapiens 19 ZNF780B 24 110 108 CCDS HistoryNCBI Gene:163131Re-query CCDS DB by CCDS ID:46077.1Re-query CCDS DB by GeneID:163131See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46077.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000434248.6 ENSP00000391641.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000434248.6Link to Ensembl Protein Viewer:ENSP00000391641.1Re-query CCDS DB by Nucleotide ID:ENST00000434248Re-query CCDS DB by Protein ID:ENSP00000391641
Original member Current member NCBI NM_001005851.3 NP_001005851.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001005851.3Link to Protein Sequence:NP_001005851.1Re-query CCDS DB by Nucleotide ID:NM_001005851Re-query CCDS DB by Protein ID:NP_001005851Link to BLAST:NP_001005851.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001005851.1 833 Q9Y6R6 833 100% 0 0

Chromosomal Locations for CCDS 46077.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 40034357 40036626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40047375 40047470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40048670 40048796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40050324 40050332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2502 nt):
ATGGTCCATGGATCAGTGACATTCAGGGATGTGGCCATTGACTTCTCTCAGGAGGAGTGGGAGTGCCTGC
AGCCTGATCAGAGGACCTTGTACAGGGATGTGATGTTGGAGAACTACAGCCACCTGATATCACTGGGAAG
TTCCATTTCTAAGCCAGATGTGATTACATTACTAGAGCAAGAGAAAGAGCCCTGGATTGTTGTAAGTAAA
GAAACAAGCAGATGGTATCCAGATTTGGAGTCAAAATATGGACCTGAGAAAATATCTCCAGAAAATGATA
TTTTTGAAATAAATTTACCCAAACATGTTATAAAGCAAATAAGTAAAACACTTGGCCTCGAGGCCTTTTA
TTTTAGAAATGACTCAGAATATAGAAGTAGATTTGAGGGACGACAGGGACATCAAGAAGGATATATCAAC
CAGAAGATCATCAGCTATGAAGAAATGCCTGCTTATACTCATGCTTCTCCTATTCATAATACACATAAAC
CATATGAATGTAAGGAATGTGGGAAATACTTTAGTTGTGGTTCAAATCTTATTCAGCATCAGAGTATTCA
TACTGGAGAGAAACCCTATAAATGCAAAGAATGTGGGAAAGCCTTTCAACTTCACATACAACTTACTCGA
CATCAGAAATTTCATACTGGTGAGAAAACTTTTGAATGTAAGGAATGTGGAAAAGCCTTTAATCTTCCCA
CCCAGCTTAATCGCCATAAGAACATTCACACAGTTAAGAAACTGTTTGAATGTAAGGAATGTGGGAAGTC
TTTTAATCGTAGCTCAAACCTTACTCAGCATCAAAGTATTCATGCTGGTGTAAAACCATATCAATGTAAG
GAGTGTGGGAAAGCCTTTAATCGTGGTTCAAATCTTATTCAGCATCAAAAAATTCATTCCAATGAGAAAC
CCTTTGTATGTAGGGAATGTGAGATGGCCTTTCGATATCATTACCAACTCATTGAACATTGCCGAATTCA
TACTGGCGAGAAACCCTTTGAATGTAAAGAATGCAGAAAGGCCTTTACTCTTCTGACAAAGCTTGTTCGA
CATCAGAAGATTCATATGGGTGAGAAGCCCTTTGAATGCAGGGAATGCGGGAAGGCCTTTAGTCTCCTCA
ATCAGCTTAATCGCCATAAGAATATTCACACAGGTGAAAAACCATTTGAATGTAAAGAATGTGGGAAGTC
CTTTAATCGTAGTTCAAACCTTATTCAACACCAGAGTATTCATGCTGATGTAAAACCATATGAATGTAAG
GAGTGTGGGAAAGGCTTTAATCGTGGTGCAAATCTTATTCAGCATCAAAAAATTCATTCCAATGAGAAAC
CCTTTGTATGTAGGGAATGTGAGATGGCCTTTCGATATCATTACCAACTTATTCAACATTGCCAAATTCA
TACTGGTGGGAAACCCTTTGAATGTAAAGAATGTGGAAAGGCCTTTAGTCTTCTGACACAGCTTGCTCGA
CATAAGAACATTCATACTGGTGAGAAACCATTTGAATGTAAAGACTGTGGGAAGGCCTTCAATCGTGGCT
CGAACCTTGTTCAACATCAGAGTATTCACACTGGTGAGAAGCCCTATGAATGTAAGGAGTGTGGGAAGGC
TTTTAGACTTCACCTACAACTTTCTCAACATGAGAAAACTCATACAGGTGAGAAACCCTTTGAATGTAAG
GAATGTGGGAAATTCTTTCGTCGTGGTTCAAATCTTAATCAACATCGAAGTATTCATACCGGAAAGAAAC
CCTTTGAATGTAAGGAATGTGGGAAAGCCTTTCGACTTCATATGCACCTTATTCGACATCAGAAATTTCA
TACTGGTGAGAAGCCCTTTGAATGTAAGGAATGTGGCAAGGCCTTCAGTCTTCACACCCAGCTTAATCAC
CATAAGAACATTCACACAGGTGAGAAGCCATTTAAATGTAAAGAATGTGGGAAGTCCTTTAATCGTGTCT
CAAACCTTGTTCAACATCAGAGTATTCATGCTGGTGTAAAACCATATGAATGTAAGGAGTGTGGGAAAGG
CTTTAGTCGTGTTTCAAACCTTATTCAGCATCAGAAAACTCATTCCAGTGCGAAACCCTTTGTATGTAAG
GAGTGTAGGAAGACCTTTAGATATCATTACCAGCTTACTGAACATTACCGAATTCATACTGGTGAGAAAC
CCTTTGAATGTAAAGAATGCGGAAAGGCCTTTGGTCTTCTGACACAGCTTGCTCAACATCAGATCATTCA
TACTGGTGAGAAGCCATTTAAATGTAAGGAGTGTGGGAAGGCCTTTAATCGTGGCTCAAACCTTGTTCAA
CCTCAGAGTATTCATACTGGTGAGAAACCCTATGAATGTAAGGAGTGTGGGAAGGCTTTTAGACTTCACC
TACAACTTTCTCTGCATCAAAAACTTGTACAGGTGAGAAACCCTTTGAATGTAAGAAATGTGGGACAGCC
TTCAGACATCAGTAGCAACTTACTGAACATCAGAAAATTCATACTTGGGTGA

Translation (833 aa):
MVHGSVTFRDVAIDFSQEEWECLQPDQRTLYRDVMLENYSHLISLGSSISKPDVITLLEQEKEPWIVVSK
ETSRWYPDLESKYGPEKISPENDIFEINLPKHVIKQISKTLGLEAFYFRNDSEYRSRFEGRQGHQEGYIN
QKIISYEEMPAYTHASPIHNTHKPYECKECGKYFSCGSNLIQHQSIHTGEKPYKCKECGKAFQLHIQLTR
HQKFHTGEKTFECKECGKAFNLPTQLNRHKNIHTVKKLFECKECGKSFNRSSNLTQHQSIHAGVKPYQCK
ECGKAFNRGSNLIQHQKIHSNEKPFVCRECEMAFRYHYQLIEHCRIHTGEKPFECKECRKAFTLLTKLVR
HQKIHMGEKPFECRECGKAFSLLNQLNRHKNIHTGEKPFECKECGKSFNRSSNLIQHQSIHADVKPYECK
ECGKGFNRGANLIQHQKIHSNEKPFVCRECEMAFRYHYQLIQHCQIHTGGKPFECKECGKAFSLLTQLAR
HKNIHTGEKPFECKDCGKAFNRGSNLVQHQSIHTGEKPYECKECGKAFRLHLQLSQHEKTHTGEKPFECK
ECGKFFRRGSNLNQHRSIHTGKKPFECKECGKAFRLHMHLIRHQKFHTGEKPFECKECGKAFSLHTQLNH
HKNIHTGEKPFKCKECGKSFNRVSNLVQHQSIHAGVKPYECKECGKGFSRVSNLIQHQKTHSSAKPFVCK
ECRKTFRYHYQLTEHYRIHTGEKPFECKECGKAFGLLTQLAQHQIIHTGEKPFKCKECGKAFNRGSNLVQ
PQSIHTGEKPYECKECGKAFRLHLQLSLHQKLVQVRNPLNVRNVGQPSDISSNLLNIRKFILG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH