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Report for CCDS46042.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46042.1 Public Homo sapiens 19 ZNF302 24 110 108 CCDS HistoryNCBI Gene:55900Re-query CCDS DB by CCDS ID:46042.1Re-query CCDS DB by GeneID:55900See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46042.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000457781.6 ENSP00000391067.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000457781.6Link to Ensembl Protein Viewer:ENSP00000391067.2Re-query CCDS DB by Nucleotide ID:ENST00000457781Re-query CCDS DB by Protein ID:ENSP00000391067
Original member Current member EBI ENST00000423823.6 ENSP00000405219.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000423823.6Link to Ensembl Protein Viewer:ENSP00000405219.2Re-query CCDS DB by Nucleotide ID:ENST00000423823Re-query CCDS DB by Protein ID:ENSP00000405219
Original member Current member EBI ENST00000505242.6 ENSP00000421028.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000505242.6Link to Ensembl Protein Viewer:ENSP00000421028.1Re-query CCDS DB by Nucleotide ID:ENST00000505242Re-query CCDS DB by Protein ID:ENSP00000421028
Original member Current member NCBI NM_001012320.3 NP_001012320.1 Accepted alive Link to Nucleotide Sequence:NM_001012320.3Link to Protein Sequence:NP_001012320.1Re-query CCDS DB by Nucleotide ID:NM_001012320Re-query CCDS DB by Protein ID:NP_001012320Link to BLAST:NP_001012320.1
Original member Current member NCBI NM_001289183.2 NP_001276112.1 Accepted alive Link to Nucleotide Sequence:NM_001289183.2Link to Protein Sequence:NP_001276112.1Re-query CCDS DB by Nucleotide ID:NM_001289183Re-query CCDS DB by Protein ID:NP_001276112Link to BLAST:NP_001276112.1
Original member Current member NCBI NM_001289186.2 NP_001276115.1 Accepted alive Link to Nucleotide Sequence:NM_001289186.2Link to Protein Sequence:NP_001276115.1Re-query CCDS DB by Nucleotide ID:NM_001289186Re-query CCDS DB by Protein ID:NP_001276115Link to BLAST:NP_001276115.1
Original member Current member NCBI NM_001289187.2 NP_001276116.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001289187.2Link to Protein Sequence:NP_001276116.1Re-query CCDS DB by Nucleotide ID:NM_001289187Re-query CCDS DB by Protein ID:NP_001276116Link to BLAST:NP_001276116.1
Original member Current member NCBI NM_018443.4 NP_060913.2 Accepted alive Link to Nucleotide Sequence:NM_018443.4Link to Protein Sequence:NP_060913.2Re-query CCDS DB by Nucleotide ID:NM_018443Re-query CCDS DB by Protein ID:NP_060913Link to BLAST:NP_060913.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001012320.1 399 Q9NR11-2 399 100% 0 0
NP_001276112.1 399 Q9NR11-2 399 100% 0 0
NP_001276115.1 399 Q9NR11-2 399 100% 0 0
NP_001276116.1 399 Q9NR11-2 399 100% 0 0
NP_060913.2 399 Q9NR11-2 399 100% 0 0

Chromosomal Locations for CCDS 46042.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 34678805 34678813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34682777 34682897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34683155 34683238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34684252 34685237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1200 nt):
ATGTCTCAGGTGACATTTAGTGATGTGGCTATAGACTTCTCTCATGAAGAGTGGGCATGCCTAGATTCTG
CTCAGAGGGACTTATACAAGGATGTGATGGTCCAGAATTATGAGAACCTGGTCTCTGTAGGTCTTTCCGT
AACTAAGCCATATGTGATCATGTTATTGGAGGATGGAAAAGAGCCCTGGATGATGGAGAAAAAACTGTCA
AAAGATTGGGAATCAAGATGGGAAAACAAGGAATTATCAACAAAGAAGGATATTTATGATGAAGATTCAC
CCCAACCAGTAACAATGGAAAAAGTTGTAAAACAAAGTTATGAATTTTCAAATTCTAATAAGAATTTGGA
ATATACAGAATGCGACACATTTAGAAGCACCTTTCATTCAAAGTCTACTCTTTCTGAACCACAAAACAAT
TCTGCTGAAGGGAATTCACACAAATATGATATATTAAAGAAGAATTTATCAAAAAAGTCAGTTATAAAAA
GTGAGAGAATAAATGGTGGAAAGAAACTTTTAAATTCTAATAAAAGTGGGGCAGCCTTCAACCAGAGCAA
ATCTCTTACCCTTCCCCAGACTTGTAATAGAGAGAAAATCTATACATGCAGTGAATGTGGGAAAGCCTTT
GGCAAACAGTCAATCCTCAGTCGCCACTGGAGAATTCATACAGGAGAGAAGCCCTATGAATGTCGTGAAT
GTGGGAAGACTTTTAGCCATGGTTCATCCCTTACACGACATCAGATAAGCCATAGTGGAGAGAAACCTTA
CAAATGCATTGAATGTGGGAAGGCCTTTAGCCATGGCTCATCACTTACTAACCATCAGAGCACTCACACG
GGAGAGAAACCGTATGAATGTATGAACTGTGGAAAGTCTTTTAGTCGTGTGTCCCTTCTCATTCAGCATC
TAAGAATTCATACGCAAGAAAAACGCTATGAGTGTCGTATATGTGGAAAGGCCTTCATTCATAGTTCGTC
TCTCATTCACCATCAGAAAAGCCATACTGGAGAGAAGCCTTATGAATGTAGAGAATGTGGGAAAGCTTTC
TGCTGTAGCTCACACCTTACTCAACATCAAAGAATTCACAGTATGAAGAAAAAATATGAATGCAACAAAT
GTCTCAAGGTCTTTAGTAGCTTCTCATTTCTTGTTCAACATCAGAGTATTCATACTGAAGAAAAACCGTT
TGAAGTTTAG

Translation (399 aa):
MSQVTFSDVAIDFSHEEWACLDSAQRDLYKDVMVQNYENLVSVGLSVTKPYVIMLLEDGKEPWMMEKKLS
KDWESRWENKELSTKKDIYDEDSPQPVTMEKVVKQSYEFSNSNKNLEYTECDTFRSTFHSKSTLSEPQNN
SAEGNSHKYDILKKNLSKKSVIKSERINGGKKLLNSNKSGAAFNQSKSLTLPQTCNREKIYTCSECGKAF
GKQSILSRHWRIHTGEKPYECRECGKTFSHGSSLTRHQISHSGEKPYKCIECGKAFSHGSSLTNHQSTHT
GEKPYECMNCGKSFSRVSLLIQHLRIHTQEKRYECRICGKAFIHSSSLIHHQKSHTGEKPYECRECGKAF
CCSSHLTQHQRIHSMKKKYECNKCLKVFSSFSFLVQHQSIHTEEKPFEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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