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Report for CCDS46028.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46028.1 Public Homo sapiens 19 ZNF90 24 110 108 CCDS HistoryNCBI Gene:7643Re-query CCDS DB by CCDS ID:46028.1Re-query CCDS DB by GeneID:7643See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46028.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000418063.3 ENSP00000410466.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000418063.3Link to Ensembl Protein Viewer:ENSP00000410466.2Re-query CCDS DB by Nucleotide ID:ENST00000418063Re-query CCDS DB by Protein ID:ENSP00000410466
Original member Current member NCBI NM_007138.2 NP_009069.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_007138.2Link to Protein Sequence:NP_009069.1Re-query CCDS DB by Nucleotide ID:NM_007138Re-query CCDS DB by Protein ID:NP_009069Link to BLAST:NP_009069.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_009069.1 601 Q03938 601 100% 0 0

Chromosomal Locations for CCDS 46028.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 20078133 20078135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 20104239 20104365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 20105221 20105316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 20117781 20119360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1806 nt):
ATGGGACCATTGGAATTTAGAGATGTGGCCATAGAATTCTCTCTGGAGGAGTGGCATTGCCTGGACACTG
CACAGCAGAATTTATATAGGGATGTGATGTTAGAGAACTACAGACACCTGGTCTTCCTTGGTATTGTTGT
CACTAAGCCAGACCTGATCACCTGTCTGGAGCAAGGAAAAAAACCCTTCACTGTGAAGAGACATGAGATG
ATTGCCAAATCCCCAGTTATGTGTTTTCATTTTGCCCAAGACCTTTGTCCAGAGCAGAGCCTAAAAGATT
CCTTCCAAAAAGTGATAGTGACAAGATATGAAAAACGTGAATATGGCAATTTAGAGTTAAAAAAAGGTTG
TGAAAGTGTGGATGAGGGTAAAGTACACAAAAGAGGTTATAATGGACTTAACCAATGTTTGACAGCTACC
CAGAGCAAAGTATTTCAATGTGATACATATGTGAAAGTCTCTCATATATTTTCAAATTCAAACAGACATA
AGATAAGAGATACTGGAAAAAAACCTTTCAAATGTATAGAATGTGGCAAAGCTTTCAACCAGTCCTCAAC
CCTTGCTACACATAAGAAAATTCATACTGGAGAGATAACCTGCAAATGTGAAGAATGTGGCAAAGCCTTC
AACAGGTCCTCACACCTTACTTCACATAAGAGAATTCATACTGGAGAGAAACGGTACAAATGTGAAGATT
GTGGCAAAGAATTAAAGTATTCCTCTACCCTTACTGCACATAAGAGAATTCATACTGGAGAGAAACGGTA
CAAATGTGAAGATTGTGGCAAAGAATTAAAGTATTCCTCTACCCTTACTGCACATAAGAGAATTCATACT
GGAGAGAAACCCTACAAGTGTGATAAATGTGGCAGAGCATTTATTTCATCCTCGATCCTTTATGTACATA
AGATAAGTCATACTGAAGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCCTTCAAGCTCTCCTCAAT
CCTTAGTACACATAAGAGAATCCATACTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCCTTC
AGGCGCTCCTTAGTCCTTCGTACACATAAGAGAATTCATACTGGAGAGAAACCCTACAAGTGTGATAAAT
GTGGCAAAGCATTTATTTCATCCTCACTCCTTTATAAACATAAGATAAGTCATAGTGAAAAGAAACCCTA
CAAATGTGAAGAATGTGGCAAAGCCTTCAAGCGCTCCTCAACACTTACTATACATAAGATAAGTCATACT
GAAGAGAAACCCTACAAATGTCAAGAATGTGACAAAGTCTTCAAACGCTCCTCAGCCCTTAGCACACATA
AGATAATTCATAGTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCCTTCAAGCGCTCCTCAAA
CCTTACTACACATAAGATAAGTCATACTGAAGAGAAACTCTACAAATGTCAAGAATGTGACAAAGCCTTC
AAGTACTCCTCAGCCCTTAGCACACATAAGATAATTCACAGTGGAGAGAATCCCTACAAATGTGAAGAAT
GTGGCAAAGCCTTCAAGCGCTCCTCAGTCCTTAGTAAACATAAGATAATTCATACTGGAGCGAAACCCTA
CAAATGTGAAGAATGTGGCAAAGCCTTTAAGCGCTCCTCACAGCTTACTAGTCATAAGATAAGTCATACT
GGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCTTTTAACTTGTCCTCAGACCTTAATACACATA
AGAGGATTCATATTGGACAGAAAGCCTACATAGTGAAGAACATGGCAAATCTTTGA

Translation (601 aa):
MGPLEFRDVAIEFSLEEWHCLDTAQQNLYRDVMLENYRHLVFLGIVVTKPDLITCLEQGKKPFTVKRHEM
IAKSPVMCFHFAQDLCPEQSLKDSFQKVIVTRYEKREYGNLELKKGCESVDEGKVHKRGYNGLNQCLTAT
QSKVFQCDTYVKVSHIFSNSNRHKIRDTGKKPFKCIECGKAFNQSSTLATHKKIHTGEITCKCEECGKAF
NRSSHLTSHKRIHTGEKRYKCEDCGKELKYSSTLTAHKRIHTGEKRYKCEDCGKELKYSSTLTAHKRIHT
GEKPYKCDKCGRAFISSSILYVHKISHTEEKPYKCEECGKAFKLSSILSTHKRIHTGEKPYKCEECGKAF
RRSLVLRTHKRIHTGEKPYKCDKCGKAFISSSLLYKHKISHSEKKPYKCEECGKAFKRSSTLTIHKISHT
EEKPYKCQECDKVFKRSSALSTHKIIHSGEKPYKCEECGKAFKRSSNLTTHKISHTEEKLYKCQECDKAF
KYSSALSTHKIIHSGENPYKCEECGKAFKRSSVLSKHKIIHTGAKPYKCEECGKAFKRSSQLTSHKISHT
GEKPYKCEECGKAFNLSSDLNTHKRIHIGQKAYIVKNMANL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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