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Report for CCDS46016.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46016.1 Public Homo sapiens 19 PDE4C 24 110 108 CCDS HistoryNCBI Gene:5143Re-query CCDS DB by CCDS ID:46016.1Re-query CCDS DB by GeneID:5143See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46016.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000447275.7 ENSP00000402091.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000447275.7Link to Ensembl Protein Viewer:ENSP00000402091.1Re-query CCDS DB by Nucleotide ID:ENST00000447275Re-query CCDS DB by Protein ID:ENSP00000402091
Original member Current member NCBI NM_001098819.4 NP_001092289.1 Accepted alive Link to Nucleotide Sequence:NM_001098819.4Link to Protein Sequence:NP_001092289.1Re-query CCDS DB by Nucleotide ID:NM_001098819Re-query CCDS DB by Protein ID:NP_001092289Link to BLAST:NP_001092289.1
Original member Current member NCBI NM_001395274.1 NP_001382203.1 Accepted alive Link to Nucleotide Sequence:NM_001395274.1Link to Protein Sequence:NP_001382203.1Re-query CCDS DB by Nucleotide ID:NM_001395274Re-query CCDS DB by Protein ID:NP_001382203Link to BLAST:NP_001382203.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001092289.1 606 Q08493-2 606 100% 0 0
NP_001382203.1 606 Q08493-2 606 100% 0 0

Chromosomal Locations for CCDS 46016.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 18210929 18211276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18211759 18211941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18213368 18213490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18216741 18216895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18218149 18218248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18218334 18218498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18218940 18219038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18219234 18219397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18220226 18220319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18220403 18220515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18220874 18220923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18221105 18221178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18221261 18221297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18222132 18222247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1821 nt):
ATGCAGGCTCCAGTCCCGCACAGCCAGCGGCGCGAGTCCTTCCTGTACCGCTCAGATAGCGACTATGAAC
TCTCGCCCAAGGCCATGTCTCGGAACTCCTCTGTGGCCAGCGACCTACATGGAGAGGACATGATTGTGAC
GCCCTTTGCCCAGGTCCTGGCCAGTCTGCGGACCGTTCGGAGCAACGTGGCGGCCCTTGCCCGCCAGCAA
TGCCTAGGAGCAGCCAAGCAGGGACCCGTCGGAAACCCTTCATCCAGCAATCAGCTCCCTCCTGCAGAGG
ACACGGGGCAGAAGCTGGCATTGGAGACGCTAGACGAGCTGGACTGGTGCCTGGATCAGTTGGAGACGCT
GCAGACCCGGCACTCGGTGGGGGAGATGGCCTCCAACAAGTTCAAGCGGATCCTGAACCGGGAGTTGACC
CACCTGTCCGAAACCAGCCGCTCCGGGAACCAGGTGTCCGAGTACATCTCCCGGACCTTCCTGGACCAGC
AGACCGAGGTGGAGCTGCCCAAGGTGACCGCTGAGGAGGCCCCACAGCCCATGTCCCGGATCAGTGGCCT
ACATGGGCTCTGCCACAGTGCCAGCCTCTCCTCAGCCACTGTCCCACGCTTTGGGGTCCAGACTGACCAG
GAGGAGCAACTGGCCAAGGAGCTAGAAGACACCAACAAGTGGGGACTTGATGTGTTCAAGGTGGCGGAGC
TAAGTGGGAACCGGCCCCTCACAGCTATCATATTCAGCATTTTTCAGGAGCGGGACCTGCTGAAGACATT
CCAGATCCCAGCAGACACACTGGCCACCTACCTGCTGATGCTGGAAGGTCACTACCACGCCAATGTGGCC
TACCACAACAGCCTACATGCCGCCGACGTGGCCCAGTCCACGCATGTGCTGCTGGCTACGCCCGCCCTCG
AGGCTGTGTTCACAGACTTGGAAATCCTGGCTGCCCTCTTTGCAAGCGCCATCCACGACGTGGACCATCC
TGGGGTCTCCAACCAGTTTCTGATTAACACCAACTCAGAGCTGGCGCTTATGTACAACGACGCCTCGGTG
CTGGAGAACCATCACCTGGCTGTGGGCTTCAAGCTGCTGCAGGCAGAGAACTGCGATATCTTCCAGAACC
TCAGCGCCAAGCAGCGACTGAGTCTGCGCAGGATGGTCATTGACATGGTGCTGGCCACAGACATGTCCAA
ACACATGAACCTCCTGGCCGACCTCAAGACCATGGTGGAGACCAAGAAGGTGACAAGCCTCGGTGTCCTC
CTCCTGGACAACTATTCCGACCGAATCCAGGTCTTGCAGAACCTGGTGCACTGTGCTGATCTGAGCAACC
CCACCAAGCCGCTGCCCCTGTACCGCCAGTGGACGGACCGCATCATGGCCGAGTTCTTCCAGCAGGGAGA
CCGCGAGCGTGAGTCGGGCCTGGACATCAGTCCCATGTGTGACAAGCATACGGCCTCAGTGGAGAAGTCC
CAGGTGGGTTTCATTGACTACATTGCTCACCCACTGTGGGAGACTTGGGCTGACCTGGTCCACCCAGATG
CACAGGACCTGCTGGACACGCTGGAGGACAATCGAGAGTGGTACCAGAGCAAGATCCCCCGAAGTCCCTC
AGACCTCACCAACCCCGAGCGGGACGGGCCTGACAGATTCCAGTTTGAACTGACTCTGGAGGAGGCAGAG
GAAGAGGATGAGGAGGAAGAAGAGGAGGGGGAAGAGACAGCTTTAGCCAAAGAGGCCTTGGAGTTGCCTG
ACACTGAACTCCTGTCCCCTGAAGCCGGCCCAGACCCTGGGGACTTACCCCTCGACAACCAGAGGACTTA
G

Translation (606 aa):
MQAPVPHSQRRESFLYRSDSDYELSPKAMSRNSSVASDLHGEDMIVTPFAQVLASLRTVRSNVAALARQQ
CLGAAKQGPVGNPSSSNQLPPAEDTGQKLALETLDELDWCLDQLETLQTRHSVGEMASNKFKRILNRELT
HLSETSRSGNQVSEYISRTFLDQQTEVELPKVTAEEAPQPMSRISGLHGLCHSASLSSATVPRFGVQTDQ
EEQLAKELEDTNKWGLDVFKVAELSGNRPLTAIIFSIFQERDLLKTFQIPADTLATYLLMLEGHYHANVA
YHNSLHAADVAQSTHVLLATPALEAVFTDLEILAALFASAIHDVDHPGVSNQFLINTNSELALMYNDASV
LENHHLAVGFKLLQAENCDIFQNLSAKQRLSLRRMVIDMVLATDMSKHMNLLADLKTMVETKKVTSLGVL
LLDNYSDRIQVLQNLVHCADLSNPTKPLPLYRQWTDRIMAEFFQQGDRERESGLDISPMCDKHTASVEKS
QVGFIDYIAHPLWETWADLVHPDAQDLLDTLEDNREWYQSKIPRSPSDLTNPERDGPDRFQFELTLEEAE
EEDEEEEEEGEETALAKEALELPDTELLSPEAGPDPGDLPLDNQRT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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