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Report for CCDS46002.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46002.2 Public Homo sapiens 19 CLEC17A 24 110 108 CCDS HistoryNCBI Gene:388512Re-query CCDS DB by CCDS ID:46002.2Re-query CCDS DB by GeneID:388512See the combined annotation on chromosome 19 in Sequence Viewer

Public Note for CCDS 46002.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 46002.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000547437.5 ENSP00000450065.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000547437.5Link to Ensembl Protein Viewer:ENSP00000450065.1Re-query CCDS DB by Nucleotide ID:ENST00000547437Re-query CCDS DB by Protein ID:ENSP00000450065
Original member Current member NCBI NM_207390.4 NP_997273.3 Accepted alive Link to Nucleotide Sequence:NM_207390.4Link to Protein Sequence:NP_997273.3Re-query CCDS DB by Nucleotide ID:NM_207390Re-query CCDS DB by Protein ID:NP_997273Link to BLAST:NP_997273.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997273.3 306 Q6ZS10-3 306 100% 0 0

Chromosomal Locations for CCDS 46002.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 14583161 14583203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 14583357 14583434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 14587614 14587691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 14592281 14592358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 14594517 14594549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 14594632 14594682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 14594759 14594800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 14595274 14595315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 14596876 14597013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 14597099 14597161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 14599717 14599812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 14600031 14600182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 14610064 14610090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (921 nt):
ATGCATAATCTGTATTCCATCACTGGGTACCCGGACCCACCAGGGACCATGGAGGAGGAGGAGGAGGATG
ATGACTATGAGAACTCAACACCTCCCTACAAGGACCTTCCTCCCAAGCCAGGGACCATGGAGGAGGAGGA
GGAGGATGATGACTATGAGAACTCAACACCTCCCTACAAGGACCTTCCTCCCAAGCCAGGGACCATGGAG
GAGGAGGAGGAGGATGATGACTATGAGAACTCAACACCTCCCTACAAGGACCTTCCTCCCAAGCCAGGTT
CAAGTGCTCCACCAAGACCTCCAAGGGCAGCAAAGGAAACAGAGAAACCCCCACTTCCTTGCAAGCCCCG
GAACATGACAGGCCTGGACCTCGCCGCTGTCACCTGTCCACCTCCTCAACTGGCTGTGAATCTTGAGCCT
TCTCCATTGCAGCCATCCCTGGCCGCAACTCCAGTCCCCTGGCTCAATCAGAGGTCTGGAGGTCCTGGCT
GCTGCCAGAAGAGGTGGATGGTGTACCTGTGTCTGCTGGTGGTGACTTCCCTGTTCCTGGGCTGCCTTGG
TCTCACTGTGACCCTGATTAAGTACCAGGAGTTGATGGAAGAACTGAGAATGTTAAGCTTTCAGCAGATG
ACGTGGCGAACAAATATGACTGGCATGGCAGGGCTAGCTGGCCTGAAGCATGACATTGCCCGTGTAAGAG
CTGACACCAACCAGTCCCTGGTGGAACTTTGGGGCTTATTAGACTGCCGCCGAATTACCTGTCCTGAAGG
CTGGCTGCCCTTTGAGGGCAAGTGTTACTACTTCTCCCCAAGCACCAAGTCATGGGATGAGGCCCGGATG
TTCTGCCAGGAGAATTACTCTCACTTGGTCATCATCAATAGCTTTGCTGAGCACCTTCTGGGAGCCAGAG
GAACCCAATAA

Translation (306 aa):
MHNLYSITGYPDPPGTMEEEEEDDDYENSTPPYKDLPPKPGTMEEEEEDDDYENSTPPYKDLPPKPGTME
EEEEDDDYENSTPPYKDLPPKPGSSAPPRPPRAAKETEKPPLPCKPRNMTGLDLAAVTCPPPQLAVNLEP
SPLQPSLAATPVPWLNQRSGGPGCCQKRWMVYLCLLVVTSLFLGCLGLTVTLIKYQELMEELRMLSFQQM
TWRTNMTGMAGLAGLKHDIARVRADTNQSLVELWGLLDCRRITCPEGWLPFEGKCYYFSPSTKSWDEARM
FCQENYSHLVIINSFAEHLLGARGTQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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