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Report for CCDS45903.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45903.1 Public Homo sapiens 19 SCAMP4 24 110 108 CCDS HistoryNCBI Gene:113178Re-query CCDS DB by CCDS ID:45903.1Re-query CCDS DB by GeneID:113178See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45903.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000316097.13 ENSP00000316007.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000316097.13Link to Ensembl Protein Viewer:ENSP00000316007.7Re-query CCDS DB by Nucleotide ID:ENST00000316097Re-query CCDS DB by Protein ID:ENSP00000316007
Original member Current member EBI ENST00000621748.1 ENSP00000479083.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000621748.1Link to Ensembl Protein Viewer:ENSP00000479083.1Re-query CCDS DB by Nucleotide ID:ENST00000621748Re-query CCDS DB by Protein ID:ENSP00000479083
Original member Current member NCBI NM_079834.4 NP_524558.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_079834.4Link to Protein Sequence:NP_524558.1Re-query CCDS DB by Nucleotide ID:NM_079834Re-query CCDS DB by Protein ID:NP_524558Link to BLAST:NP_524558.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_524558.1 229 Q969E2-1 229 100% 0 0

Chromosomal Locations for CCDS 45903.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 1915020 1915026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1917694 1917822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1918127 1918283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1918889 1918990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1923070 1923187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1924108 1924284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (690 nt):
ATGTCAGAAAAGGAGAACAACTTCCCGCCACTGCCCAAGTTCATCCCTGTGAAGCCCTGCTTCTACCAGA
ACTTCTCCGACGAGATCCCAGTGGAGCACCAGGTCCTGGTGAAGAGGATCTACCGGCTGTGGATGTTTTA
CTGCGCCACCCTCGGCGTCAACCTCATTGCCTGCCTGGCCTGGTGGATCGGCGGAGGCTCGGGGACCAAC
TTCGGCCTGGCCTTCGTGTGGCTGCTCCTGTTCACGCCTTGCGGCTACGTGTGCTGGTTCCGGCCTGTCT
ACAAGGCCTTCCGAGCCGACAGCTCCTTTAATTTCATGGCGTTTTTCTTCATCTTCGGAGCCCAGTTTGT
CCTGACCGTCATCCAGGCGATTGGCTTCTCCGGCTGGGGCGCGTGCGGCTGGCTGTCGGCAATTGGATTC
TTCCAGTACAGCCCGGGCGCTGCCGTGGTCATGCTGCTTCCAGCCATCATGTTCTCCGTGTCGGCTGCCA
TGATGGCCATCGCGATCATGAAGGTGCACAGGATCTACCGAGGGGCTGGCGGAAGCTTCCAGAAGGCACA
GACGGAGTGGAACACGGGCACTTGGCGGAACCCACCGTCGAGGGAGGCCCAGTACAACAACTTCTCAGGC
AACAGCCTGCCCGAGTACCCCACTGTGCCCAGCTACCCGGGCAGTGGCCAGTGGCCTTAG

Translation (229 aa):
MSEKENNFPPLPKFIPVKPCFYQNFSDEIPVEHQVLVKRIYRLWMFYCATLGVNLIACLAWWIGGGSGTN
FGLAFVWLLLFTPCGYVCWFRPVYKAFRADSSFNFMAFFFIFGAQFVLTVIQAIGFSGWGACGWLSAIGF
FQYSPGAAVVMLLPAIMFSVSAAMMAIAIMKVHRIYRGAGGSFQKAQTEWNTGTWRNPPSREAQYNNFSG
NSLPEYPTVPSYPGSGQWP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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