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Report for CCDS45880.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45880.1 Public Homo sapiens 18 ZCCHC2 24 110 108 CCDS HistoryNCBI Gene:54877Re-query CCDS DB by CCDS ID:45880.1Re-query CCDS DB by GeneID:54877See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45880.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000269499.10 ENSP00000269499.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000269499.10Link to Ensembl Protein Viewer:ENSP00000269499.4Re-query CCDS DB by Nucleotide ID:ENST00000269499Re-query CCDS DB by Protein ID:ENSP00000269499
Original member Current member NCBI NM_017742.6 NP_060212.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017742.6Link to Protein Sequence:NP_060212.4Re-query CCDS DB by Nucleotide ID:NM_017742Re-query CCDS DB by Protein ID:NP_060212Link to BLAST:NP_060212.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060212.4 1178 Q9C0B9-1 1178 100% 0 0

Chromosomal Locations for CCDS 45880.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 62523425 62524363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62539681 62539792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62542498 62542574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62544802 62544873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62550348 62550460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62556203 62556297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62558687 62558770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62560587 62560644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62563009 62563144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62564571 62564635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62565002 62565096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62570103 62570231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62574057 62575550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 62576512 62576579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3537 nt):
ATGCTGAGGATGAAGCTGCCGCTGAAGCCAACGCACCCCGCGGAGCCGCCGCCCGAGGCGGAGGAGCCCG
AG
GCGGACGCGCGGCCGGGCGCGAAGGCGCCTTCGCGCCGCCGCCGCGACTGCCGCCCCCCGCCGCCGCC
G
CCGCCGCCCGCGGGCCCGTCGCGGGGCCCTCTGCCGCCGCCGCCGCCGCCCCGGGGACTCGGGCCGCCT
GTT
GCTGGTGGAGCGGCGGCGGGGGCGGGTATGCCGGGCGGCGGCGGGGGGCCCTCGGCGGCGCTGCGCG
AG
CAGGAGCGGGTATACGAGTGGTTCGGGCTGGTGCTGGGCTCGGCGCAGCGCCTGGAGTTCATGTGCGG
G
CTGCTGGACCTGTGCAACCCGCTGGAGCTGCGCTTCCTTGGCTCGTGCCTGGAGGACCTGGCGCGCAAG
GAC
TACCACTACCTGCGCGACTCGGAGGCCAAGGCCAACGGCCTCTCGGACCCGGGGCCGCTGGCCGACT
TC
CGAGAGCCCGCGGTGCGCTCGCGCCTCATCGTCTACCTGGCGCTGCTGGGCTCGGAGAACCGGGAGGC
C
GCTGGCCGTCTGCACCGCCTGCTACCCCAGGTGGACTCGGTGCTCAAAAGCCTGCGCGCGGCCCGGGGC
GAG
GGCTCGCGGGGCGGCGCGGAGGACGAGCGCGGCGAGGACGGCGACGGCGAGCAGGACGCCGAGAAGG
AC
GGCTCAGGCCCGGAAGGCGGCATTGTGGAGCCCCGGGTCGGCGGCGGGCTTGGCTCCAGGGCCCAGGA
G
GAACTGCTGCTGCTCTTCACCATGGCCTCGCTGCACCCGGCTTTCTCCTTCCACCAGCGGGTCACCCTG
AGG
GAACACTTGGAGAGGCTCCGCGCCGCGCTCCGCGGGGGCCCCGAGGACGCGGAGGTGGAGGTAGAGC
CG
TGCAAGTTTGCCGGCCCCAGGGCCCAGAACAACTCTGCTCATGGTGATTACATGCAAAATAACGAGAG
C
AGCTTAATAGAGCAAGCTCCAATACCTCAGGACGGACTTACCGTGGCACCTCACAGAGCTCAGCGAGAA
G
CT
GTACACATTGAGAAGATAATGTTGAAAGGAGTCCAGAGAAAAAGAGCTGACAAATACTGGGAGTACA
CT
TTCAAAGTAAATTGGTCTGATCTTTCAGTCACAACAGTAACAAAAACCCACCAAGAACTACAGGAATT
T
CTACTGAAGCTTCCAAAGGAACTGTCTTCAGAGACTTTTGACAAGACCATCTTAAGAGCCCTGAATCAG
GGT
TCCTTGAAAAGGGAGGAACGGCGACATCCTGACCTAGAGCCCATCCTAAGGCAGCTATTTTCAAGTT
CA
TCACAAGCTTTTCTACAAAGTCAGAAAGTACACAGCTTCTTTCAGTCCATATCATCAGACTCCCTACA
C
AGTATCAATAACTTACAATCCTCTCTGAAGACTTCTAAGATATTAGAACACTTAAAAGAAGACAGCTCT
GAA
GCTTCAAGTCAAGAAGAAGATGTGTTGCAGCATGCCATAATCCACAAGAAGCATACTGGGAAAAGTC
CC
ATTGTGAACAATATTGGTACAAGTTGTTCTCCATTGGATGGGCTTACCATGCAATATTCTGAACAGAA
T
GGAATTGTGGATTGGAGGAAGCAAAGCTGTACCACCATTCAACACCCAGAGCACTGTGTGACCTCGGCT
GAC
CAGCATTCTGCTGAAAAACGGAGTTTATCTTCAATAAATAAGAAGAAAGGAAAGCCACAAACAGAAA
A
G
GAGAAAATTAAGAAAACTGACAACAGATTGAATAGTAGAATAAATGGTATTAGACTCTCCACTCCTCA
G
CATGCCCATGGTGGTACTGTGAAAGATGTGAATTTGGACATTGGCTCTGGACATGACACATGTGGAGAA
ACA
TCTTCAGAGAGTTACAGTTCTCCATCTAGTCCCCGACATGATGGAAGAGAAAGTTTTGAAAGTGAAG
AA
GAGAAAGACAGAGACACAGACAGCAATTCTGAGGATTCTGGGAATCCATCAACAACTAGGTTTACAGG
T
TACGGTTCTGTCAACCAGACTGTCACTGTCAAGCCACCTGTTCAAATTGCTTCACTAGGAAATGAGAAT
GGA
AACCTTTTAGAAGATCCCTTAAACTCACCCAAGTATCAGCATATTTCTTTTATGCCAACGTTACACT
GT
GTCATGCACAATGGTGCCCAGAAGTCTGAAGTTGTCGTTCCTGCACCCAAACCCGCTGATGGCAAAAC
C
ATAGGGATGCTTGTTCCTAGTCCTGTTGCTATTTCTGCAATAAGGGAGTCTGCAAATTCAACCCCTGTT
GGA
ATACTAGGGCCAACAGCTTGCACTGGAGAATCGGAAAAGCACCTTGAGTTACTGGCTTCCCCTTTAC
CT
ATTCCATCAACCTTCCTTCCACACAGTAGTACTCCCGCTTTGCATCTTACAGTTCAGAGGCTAAAGTT
G
CCACCACCACAGGGATCTTCTGAGAGCTGCACAGTTAACATCCCACAACAACCACCCGGAAGCCTGAGC
ATC
GCATCACCAAACACTGCCTTTATTCCTATCCATAACCCAGGTAGTTTCCCAGGCTCTCCTGTTGCTA
CC
ACGGACCCCATCACAAAATCTGCATCCCAAGTGGTAGGACTCAATCAAATGGTGCCTCAAATTGAGGG
A
AACACAGGGACAGTCCCTCAGCCTACCAATGTGAAGGTAGTTCTTCCAGCAGCTGGCCTCTCAGCTGCT
CAG
CCACCAGCTTCCTACCCCTTACCAGGCTCTCCCCTTGCTGCCGGCGTGTTACCCAGCCAGAACTCCA
GT
GTGCTCAGCACAGCAGCAACTTCTCCCCAGCCAGCGAGCGCAGGTATCAGCCAGGCCCAGGCAACTGT
T
CCTCCTGCAGTTCCTACCCACACCCCAGGCCCTGCCCCGAGCCCAAGCCCTGCCTTGACACACAGTACC
GCG
CAGAGTGACAGCACCTCTTACATCAGTGCTGTGGGGAACACGAACGCTAATGGGACAGTAGTGCCAC
CG
CAGCAGATGGGCTCAGGTCCTTGTGGTTCTTGTGGGCGAAGGTGCAGCTGTGGGACCAATGGAAACCT
T
CAGCTAAATAGTTACTATTATCCTAATCCAATGCCTGGACCAATGTACCGAGTCCCTTCATTCTTTACT
CTG
CCATCCATTTGCAATGGCAGCTACCTCAACCAAGCACATCAGAGCAATGGAAACCAACTTCCTTTTT
TT
CTGCCTCAGACTCCATATGCAAATGGACTGGTACATGACCCAGTCATGGGGAGCCAAGCCAACTATGG
C
ATGCAGCAGATGGCAGGATTTGGGAGATTCTATCCTGTATATCCAGCACCTAACGTAGTTGCCAACACC
AGT
GGTTCGGGGCCCAAGAAGAATGGGAATGTCTCATGTTACAATTGTGGTGTAAGCGGACACTATGCAC
AG
GACTGTAAGCAGTCGTCCATGGAGGCCAATCAACAAGGCACTTACAGACTGAGATACGCACCTCCCCT
C
CCCCCTTCTAATGATACGTTGGATTCTGCAGACTGA


Translation (1178 aa):
MLRMKLPLKPTHPAEPPPEAEEPEADARPGAKAPSRRRRDCRPPPPPPPPAGPSRGPLPPPPPPRGLGPP
V
AGGAAAGAGMPGGGGGPSAALREQERVYEWFGLVLGSAQRLEFMCGLLDLCNPLELRFLGSCLEDLARK
D
YHYLRDSEAKANGLSDPGPLADFREPAVRSRLIVYLALLGSENREAAGRLHRLLPQVDSVLKSLRAARG
E
GSRGGAEDERGEDGDGEQDAEKDGSGPEGGIVEPRVGGGLGSRAQEELLLLFTMASLHPAFSFHQRVTL
R
EHLERLRAALRGGPEDAEVEVEPCKFAGPRAQ
NNSAHGDYMQNNESSLIEQAPIPQDGLTVAPHRAQRE
A
VHIEKIMLKGVQRKRADKYWEYTFKVNWSDLSVTTVTKTHQELQEFLLKLPKELSSETFDKTILRALNQ
G
SLKREERRHPDLEPIL
RQLFSSSSQAFLQSQKVHSFFQSISSDSLHSINNLQSSLKTSKILEHLKEDSS
E
ASSQEE
DVLQHAIIHKKHTGKSPIVNNIGTSCSPLDGLTMQYSEQNGIVDWRKQSCTTIQHPEHCVTSA
D
Q
HSAEKRSLSSINKKKGKPQTEKEKIKKTDNRLNSRINGIRLSTPQHAHGGTVKDVNLDIGSGHDTCGE
T
SSESYSSPSSPRHDGRESFESEEEKDR
DTDSNSEDSGNPSTTRFTGYGSVNQTVTVKPPVQIASLGNEN
G
NLLEDPLNSPKYQHISFMPTLHCVMHNGAQKSEVVVPAPKPADGKTIGMLVPSPVAISAIRESANSTPV
G
ILGPTACTGESEKHLELLASPLPIPSTFLPHSSTPALHLTVQRLKLPPPQGSSESCTVNIPQQPPGSLS
I
ASPNTAFIPIHNPGSFPGSPVATTDPITKSASQVVGLNQMVPQIEGNTGTVPQPTNVKVVLPAAGLSAA
Q
PPASYPLPGSPLAAGVLPSQNSSVLSTAATSPQPASAGISQAQATVPPAVPTHTPGPAPSPSPALTHST
A
QSDSTSYISAVGNTNANGTVVPPQQMGSGPCGSCGRRCSCGTNGNLQLNSYYYPNPMPGPMYRVPSFFT
L
PSICNGSYLNQAHQSNGNQLPFFLPQTPYANGLVHDPVMGSQANYGMQQMAGFGRFYPVYPAPNVVANT
S
GSGPKKNGNVSCYNCGVSGHYAQDCKQSSMEANQQ
GTYRLRYAPPLPPSNDTLDSAD



Links Key
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 Genome Browser Links:   Ensembl Genome Browser
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