NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS45842.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45842.1 Public Homo sapiens 18 PSMA8 24 110 108 CCDS HistoryNCBI Gene:143471Re-query CCDS DB by CCDS ID:45842.1Re-query CCDS DB by GeneID:143471See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45842.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000415576.7 ENSP00000409284.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000415576.7Link to Ensembl Protein Viewer:ENSP00000409284.2Re-query CCDS DB by Nucleotide ID:ENST00000415576Re-query CCDS DB by Protein ID:ENSP00000409284
Original member Current member NCBI NM_001025096.2 NP_001020267.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001025096.2Link to Protein Sequence:NP_001020267.1Re-query CCDS DB by Nucleotide ID:NM_001025096Re-query CCDS DB by Protein ID:NP_001020267Link to BLAST:NP_001020267.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001020267.1 250 Q8TAA3-5 250 100% 0 0

Chromosomal Locations for CCDS 45842.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 26133966 26134067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 26144559 26144685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 26151858 26151982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 26158122 26158244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 26178830 26178949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 26179068 26179130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 26192319 26192411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (753 nt):
ATGGCGTCTCGATATGACAGGGCGATCACTGTCTTCTCCCCAGACGGACACCTTTTTCAAGTTGAATATG
CCCAGGAAGCGGTGAAGAAAGGATCCACCGCGGTCGGAATTCGAGGTACCAATATAGTTGTTCTTGGGGT
AGAAAAAAAATCTGTTGCCAAGCTTCAAGATGAAAGAACTGTGAGGAAAATTTGTGCCCTTGATGACCAT
GTCTGCATGGCTTTTGCAGGACTTACTGCTGATGCTAGAGTAGTAATAAACAGAGCCCGTGTGGAGTGCC
AGAGCCATAAGCTTACGGTTGAGGACCCAGTCACTGTAGAATACATAACTCGCTTCATAGCAACTTTAAA
GCAGAAATATACCCAAAGCAATGGACGAAGACCTTTTGGTATTTCTGCCTTAATTGTAGGTTTTGATGAT
GATGGTATCTCAAGATTGTATCAGACAGATCCTTCTGGTACTTATCATGCTTGGAAGGCAAATGCAATAG
GCCGAAGTGCTAAAACTGTTCGAGAATTTCTAGAAAAGAATTACACAGAAGATGCCATAGCAAGTGACAG
TGAAGCTATCAAGTTAGCAATAAAAGCTTTGCTAGAAGTTGTCCAGTCTGGTGGAAAAAACATTGAACTT
GCTATAATAAGAAGAAATCAACCTTTGAAGATGTTTAGTGCAAAAGAAGTTGAATTATATGTAACTGAAA
TAGAAAAGGAAAAGGAAGAAGCAGAGAAGAAAAAATCAAAGAAATCTGTCTAA

Translation (250 aa):
MASRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVRKICALDDH
VCMAFAGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDD
DGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAIASDSEAIKLAIKALLEVVQSGGKNIEL
AIIRRNQPLKMFSAKEVELYVTEIEKEKEEAEKKKSKKSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH