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Report for CCDS45839.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45839.1 Public Homo sapiens 18 TTC39C 24 110 108 CCDS HistoryNCBI Gene:125488Re-query CCDS DB by CCDS ID:45839.1Re-query CCDS DB by GeneID:125488See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45839.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000317571.8 ENSP00000323645.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000317571.8Link to Ensembl Protein Viewer:ENSP00000323645.3Re-query CCDS DB by Nucleotide ID:ENST00000317571Re-query CCDS DB by Protein ID:ENSP00000323645
Original member Current member NCBI NM_001135993.2 NP_001129465.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001135993.2Link to Protein Sequence:NP_001129465.1Re-query CCDS DB by Nucleotide ID:NM_001135993Re-query CCDS DB by Protein ID:NP_001129465Link to BLAST:NP_001129465.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129465.1 583 Q8N584-1 583 100% 0 0

Chromosomal Locations for CCDS 45839.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 24014872 24015038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24064140 24064188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24066012 24066140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24069157 24069271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24080585 24080939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24082913 24083081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24114554 24114647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24118125 24118232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24123834 24123943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24125427 24125550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24128886 24128983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24130313 24130417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24131882 24131920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24132485 24132574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1752 nt):
ATGGCCGGCTCGGAGCAGCAGCGGCCGCGGCGGCGGGACGACGGAGACTCGGACGCGGCAGCGGCGGCGG
CGGCGCCCCTGCAGGACGCGGAGCTGGCCCTGGCCGGCATCAACATGCTGCTCAACAACGGCTTCAGGGA
GTCGGACCAGCTTTTCAAACAATACAGAAATCATAGCCCACTAATGAGTTTTGGAGCCAGCTTTGTCAGT
TTTTTGAATGCCATGATGACATTTGAGGAAGAAAAAATGCAGTTGGCATGTGATGACTTAAAAACCACAG
AAAAACTGTGTGAAAGTGAAGAGGCTGGAGTAATTGAAACAATCAAGAATAAAATTAAGAAGAACGTTGA
TGTCCGAAAATCCGCCCCCTCTATGGTTGATCGGCTTCAGAGGCAGATAATCATAGCTGACTGCCAGGTT
TACCTGGCTGTGCTTTCATTTGTAAAACAAGAATTGTCAGCTTATATCAAAGGTGGGTGGATCCTTAGGA
AAGCCTGGAAGATTTACAATAAATGCTATCTGGACATCAATGCCCTTCAGGAGCTGTATCAGAAGAAGCT
AACTGAAGAGTCCTTGACTTCTGATGCTGCAAATGATAATCACATTGTGGCTGAAGGGGTGTCTGAGGAG
TCTCTGAACAGACTGAAAGGTGCTGTTAGCTTTGGATATGGCCTTTTTCACCTTTGCATATCCATGGTGC
CCCCAAACCTGCTCAAAATCATCAACCTGCTGGGTTTTCCTGGAGACCGCCTACAGGGGCTTTCTTCACT
GATGTATGCAAGCGAAAGTAAGGACATGAAGGCCCCTTTAGCTACATTAGCTCTGCTCTGGTATCATACT
GTAGTCCGCCCGTTTTTTGCCTTGGATGGCAGTGATAACAAGGCAGGCCTGGATGAAGCTAAGGAAATTC
TCCTTAAAAAAGAAGCTGCTTATCCAAATTCTTCCCTCTTTATGTTTTTCAAGGGACGGATACAACGACT
AGAGTGTCAAATCAACAGTGCCTTGACATCTTTCCACACTGCTTTGGAACTTGCAGTAGACCAGAGAGAA
ATTCAACATGTCTGTCTGTATGAAATTGGTTGGTGCAGCATGATAGAGCTCAATTTCAAGGATGCATTTG
ATTCCTTTGAGAGGCTAAAAAATGAGTCCAGGTGGTCCCAGTGCTATTATGCCTACTTGACTGCAGTTTG
TCAGGGAGCCACTGGTGATGTGGATGGGGCACAGATTGTCTTTAAAGAAGTTCAGAAACTCTTCAAAAGG
AAAAACAATCAGATTGAACAGTTCTCGGTGAAAAAGGCAGAGCGATTTCGGAAGCAAACCCCAACCAAAG
CGCTCTGTGTGTTGGCGTCTATTGAAGTGTTGTACTTGTGGAAAGCTCTTCCAAACTGTTCCTTCCCCAA
CCTGCAGAGGATGAGTCAAGCTTGCCATGAAGTGGATGACTCATCTGTTGTTGGATTAAAGTATTTGCTT
CTTGGTGCCATACACAAATGTCTAGGAAACTCAGAAGATGCTGTTCAGTACTTCCAGCGAGCTGTTAAAG
ATGAATTGTGTCGTCAGAATAACTTATATGTTCAGCCGTATGCCTGTTATGAACTTGGCTGTCTTCTATT
AGACAAACCAGAGACTGTAGGAAGAGGCAGAGCTCTACTTCTTCAAGCAAAGGAGGATTTCTCTGGCTAC
GACTTTGAAAACAGATTGCATGTCCGCATCCATGCTGCTCTGGCCTCTCTGAGGGAATTGGTTCCTCAGT
GA

Translation (583 aa):
MAGSEQQRPRRRDDGDSDAAAAAAAPLQDAELALAGINMLLNNGFRESDQLFKQYRNHSPLMSFGASFVS
FLNAMMTFEEEKMQLACDDLKTTEKLCESEEAGVIETIKNKIKKNVDVRKSAPSMVDRLQRQIIIADCQV
YLAVLSFVKQELSAYIKGGWILRKAWKIYNKCYLDINALQELYQKKLTEESLTSDAANDNHIVAEGVSEE
SLNRLKGAVSFGYGLFHLCISMVPPNLLKIINLLGFPGDRLQGLSSLMYASESKDMKAPLATLALLWYHT
VVRPFFALDGSDNKAGLDEAKEILLKKEAAYPNSSLFMFFKGRIQRLECQINSALTSFHTALELAVDQRE
IQHVCLYEIGWCSMIELNFKDAFDSFERLKNESRWSQCYYAYLTAVCQGATGDVDGAQIVFKEVQKLFKR
KNNQIEQFSVKKAERFRKQTPTKALCVLASIEVLYLWKALPNCSFPNLQRMSQACHEVDDSSVVGLKYLL
LGAIHKCLGNSEDAVQYFQRAVKDELCRQNNLYVQPYACYELGCLLLDKPETVGRGRALLLQAKEDFSGY
DFENRLHVRIHAALASLRELVPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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