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Report for CCDS45835.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45835.1 Public Homo sapiens 18 POTEC 24 110 108 CCDS HistoryNCBI Gene:388468Re-query CCDS DB by CCDS ID:45835.1Re-query CCDS DB by GeneID:388468See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45835.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000358970.10 ENSP00000351856.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000358970.10Link to Ensembl Protein Viewer:ENSP00000351856.5Re-query CCDS DB by Nucleotide ID:ENST00000358970Re-query CCDS DB by Protein ID:ENSP00000351856
Original member Current member NCBI NM_001137671.2 NP_001131143.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001137671.2Link to Protein Sequence:NP_001131143.1Re-query CCDS DB by Nucleotide ID:NM_001137671Re-query CCDS DB by Protein ID:NP_001131143Link to BLAST:NP_001131143.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001131143.1 542 B2RU33 542 100% 0 0

Chromosomal Locations for CCDS 45835.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 14511898 14511993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 14513662 14513785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 14522254 14522420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 14523463 14523507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 14524913 14524983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 14530483 14530553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 14533061 14533198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 14534901 14535007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 14537801 14537974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 14538135 14538249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 14542626 14543146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1629 nt):
ATGGTGACTGAGGTTTGTTCAATGCCCGCTGCCTCTGCTGTGAAGAAGCCATTCGATCTCAGGAGCAAGA
TGGGCAAGTGGTTTCACCACCGCTTCCCCTGCTGCAAGGGGAGCGGCAAGAGCAACATGGGCACTTCTGG
AGACCACGACGACTCCTTTATGAAGATGCTCAGGAGCAAGATGGGCAAGTGTTGCCACCACTGCTTCCCC
TGCTGCAGGGGGAGCGGCACGAGCAACGTGGGCACTTCTGGAGACCATGACAACTCCTTTATGAAGACGC
TCAGGAGCAAGATGGGCAAGTGGTGCTGTCACTGCTTCCCCTGCTGCAGGGGGAGCGGCAAGAGCAACGT
GGGCGCTTGGGGAGACTACGACGACAGCGCCTTCATGGAGCCGAGGTACCACGTCCGTCGAGAAGATCTG
GACAAGCTCCACAGAGCTGCCTGGTGGGGTAAGGTCCCCAGAAAGGATCTCATCGTCATGCTCAGGGACA
CGGACATGAACAAGAGGGACAAGCAAAAGAGGACTGCTCTACATTTGGCCTCTGCCAATGGAAATTCAGA
AGTAGTACAACTCCTGCTGGACAGACGATGTCAACTTAATGTCCTTGACAACAAAAAAAGGACAGCTCTG
ATAAAGGCCGTACAATGCCAGGAAGATGAATGTGTGTTAATGTTGCTGGAACATGGCGCTGATCAAAATA
TTCCAGATGAGTATGGAAATACCACTCTACACTATGCTGTCCACAATGAAGATAAATTAATGGCCAAAGC
ACTGCTCTTATATGGTGCTGATATTGAATCAAAAAACAAGTGTGGCCTCACACCACTTTTGCTTGGCGTA
CATGAACAAAAACAGCAAGTGGTGAAATTTTTAATCAAGAAAAAAGCTAATTTAAATGCACTTGATAGAT
ATGGAAGAACTGCCCTCATACTTGCTGTATGTTGTGGATCAGCAAGTATAGTCAATCTTCTCCTTGAGCA
AAATGTTGATGTATCTTCTCAAGATCTATCTGGACAGACGGCCAGAGAGTATGCTGTTTCTAGTCATCAT
CATGTAATTTGTGAATTACTTTCTGACTATAAAGAAAAACAGATGCTAAAAATCTCTTCTGAAAACAGCA
ATCCAGAACAAGACTTAAAGCTAACATCAGAGGAAGAGTCACAAAGGCTTAAAGTCAGTGAAAATAGCCA
GCCAGAGAAAATGTCTCAAGAACCAGAAATAAATAAGGACTGTGATAGAGAGGTTGAAGAAGAAATAAAG
AAGCATGGAAGTAATCCTGTGGGATTACCAGAAAACCTGACTAATGGTGCCAGTGCTGGCAATGGTGATG
ATGGATTAATTCCACAAAGGAGGAGCAGAAAACCTGAAAATCAGCAATTTCCTGACACTGAGAATGAAGA
GTATCACAGTGACGAACAAAATGATACCCGGAAACAACTTTCTGAAGAACAGAACACTGGAATATCACAA
GATGAGATTCTGACTAATAAACAAAAGCAGATAGAAGTGGCTGAAAAGAAAATGAATTCTGAGCTTTCTC
TTAGTCATAAGAAAGAAGAAGATCTCTTGCGTGAAAACAGCATGTTGCAGGAAGAAATTGCCATGCTAAT
TTCTGGAGACTGGAACTAG

Translation (542 aa):
MVTEVCSMPAASAVKKPFDLRSKMGKWFHHRFPCCKGSGKSNMGTSGDHDDSFMKMLRSKMGKCCHHCFP
CCRGSGTSNVGTSGDHDNSFMKTLRSKMGKWCCHCFPCCRGSGKSNVGAWGDYDDSAFMEPRYHVRREDL
DKLHRAAWWGKVPRKDLIVMLRDTDMNKRDKQKRTALHLASANGNSEVVQLLLDRRCQLNVLDNKKRTAL
IKAVQCQEDECVLMLLEHGADQNIPDEYGNTTLHYAVHNEDKLMAKALLLYGADIESKNKCGLTPLLLGV
HEQKQQVVKFLIKKKANLNALDRYGRTALILAVCCGSASIVNLLLEQNVDVSSQDLSGQTAREYAVSSHH
HVICELLSDYKEKQMLKISSENSNPEQDLKLTSEEESQRLKVSENSQPEKMSQEPEINKDCDREVEEEIK
KHGSNPVGLPENLTNGASAGNGDDGLIPQRRSRKPENQQFPDTENEEYHSDEQNDTRKQLSEEQNTGISQ
DEILTNKQKQIEVAEKKMNSELSLSHKKEEDLLRENSMLQEEIAMLISGDWN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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