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Report for CCDS45717.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45717.1 Public Homo sapiens 17 ARL17A 24 110 108 CCDS HistoryNCBI Gene:51326Re-query CCDS DB by CCDS ID:45717.1Re-query CCDS DB by GeneID:51326See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45717.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000445552.6 ENSP00000416535.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000445552.6Link to Ensembl Protein Viewer:ENSP00000416535.2Re-query CCDS DB by Nucleotide ID:ENST00000445552Re-query CCDS DB by Protein ID:ENSP00000416535
Original member Current member EBI ENST00000706245.1 ENSP00000516292.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000706245.1Link to Ensembl Protein Viewer:ENSP00000516292.1Re-query CCDS DB by Nucleotide ID:ENST00000706245Re-query CCDS DB by Protein ID:ENSP00000516292
Original member Current member EBI ENST00000706247.1 ENSP00000516294.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000706247.1Link to Ensembl Protein Viewer:ENSP00000516294.1Re-query CCDS DB by Nucleotide ID:ENST00000706247Re-query CCDS DB by Protein ID:ENSP00000516294
Original member Current member EBI ENST00000706254.1 ENSP00000516301.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000706254.1Link to Ensembl Protein Viewer:ENSP00000516301.1Re-query CCDS DB by Nucleotide ID:ENST00000706254Re-query CCDS DB by Protein ID:ENSP00000516301
Original member Current member EBI ENST00000706302.1 ENSP00000516342.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000706302.1Link to Ensembl Protein Viewer:ENSP00000516342.1Re-query CCDS DB by Nucleotide ID:ENST00000706302Re-query CCDS DB by Protein ID:ENSP00000516342
Original member Current member NCBI NM_001288812.1 NP_001275741.1 Accepted alive Link to Nucleotide Sequence:NM_001288812.1Link to Protein Sequence:NP_001275741.1Re-query CCDS DB by Nucleotide ID:NM_001288812Re-query CCDS DB by Protein ID:NP_001275741Link to BLAST:NP_001275741.1
Original member Current member NCBI NM_016632.2 NP_057716.2 Accepted alive Link to Nucleotide Sequence:NM_016632.2Link to Protein Sequence:NP_057716.2Re-query CCDS DB by Nucleotide ID:NM_016632Re-query CCDS DB by Protein ID:NP_057716Link to BLAST:NP_057716.2

Chromosomal Locations for CCDS 45717.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 46517115 46517233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46570759 46570869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46576175 46576322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (378 nt):
ATGGGAAACATTTTTGAAAAGCTCTTTAAAAGTCTACTTGGGAAAAAAAAGATGCGGATTCTTATATTGA
GTTTGGATACAGCTGGAAAAACCACCATCTTGTATAAATTGAAGCTGGGGGAGACTGTGCCTGCCGTCCC
TACAGTAGGTTTCTGTGTGGAGACAGTAGAATATAAAAATAACACCTTCGCTGTCTGGGATGTTGGCAGC
CACTTCAAAATCAGACCTCTGTGGCAGCATTTTTTCCAGAACACAAAAGAGCTATCAGCTTCCCAGTTTG
CACAATTCATCAAGAAATTATGCGGGGTCACCGGCACAAATGATGAGGCATCTCCTGGAAGCTTAACTTC
TTATCCATCCCATCTCTTGGACAGATGA

Translation (125 aa):
MGNIFEKLFKSLLGKKKMRILILSLDTAGKTTILYKLKLGETVPAVPTVGFCVETVEYKNNTFAVWDVGS
HFKIRPLWQHFFQNTKELSASQFAQFIKKLCGVTGTNDEASPGSLTSYPSHLLDR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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