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Report for CCDS45620.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45620.1 Public Homo sapiens 17 LRRC75A 24 110 108 CCDS HistoryNCBI Gene:388341Re-query CCDS DB by CCDS ID:45620.1Re-query CCDS DB by GeneID:388341See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45620.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000470794.2 ENSP00000419502.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000470794.2Link to Ensembl Protein Viewer:ENSP00000419502.1Re-query CCDS DB by Nucleotide ID:ENST00000470794Re-query CCDS DB by Protein ID:ENSP00000419502
Original member Current member NCBI NM_001113567.3 NP_001107039.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001113567.3Link to Protein Sequence:NP_001107039.1Re-query CCDS DB by Nucleotide ID:NM_001113567Re-query CCDS DB by Protein ID:NP_001107039Link to BLAST:NP_001107039.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001107039.1 344 Q8NAA5-1 344 100% 0 0

Chromosomal Locations for CCDS 45620.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 16443588 16444131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 16447845 16447960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 16462258 16462386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 16491745 16491990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1035 nt):
ATGGGCACCCGGCAGACCAAGGGCAGCCTGGCGGAGAGAGCCAGCCCCGGCGCCGCGCCGGGCCCCCGAC
GCGAACGGCCGGACTTCTGGGCGTCGCTGCTGCTGCGCGCCGGGGACAAGGCGGGGCGCGCGGGCGCGGG
GATGCCCCCCTACCACCGGCGAGTCGGCATGGTCCAGGAGCTGCTGCGGATGGTGCGCCAGGGCCGGCGG
GAGGAGGCGGGGACGCTGCTGCAGCACCTGCGCCAGGACCTGGGCATGGAGTCGACCTCGCTAGACGACG
TTCTGTATCGCTACGCCAGCTTCCGGAACCTGGTGGACCCCATCACACACGACCTCATCATCAGCCTGGC
ACGCTACATCCACTGTCCCAAGCCGGAAGGCGATGCACTGGGCGCCATGGAGAAGCTGTGCCGGCAGCTG
ACATACCACCTCAGCCCCCACTCCCAGTGGAGGCGGCACCGGGGGCTGGTGAAAAGGAAGCCACAGGCCT
GCCTCAAGGCTGTCCTGGCCGGAAGCCCCCCAGACAACACAGTGGACCTGTCGGGAATCCCACTGACCTC
CCGAGACCTGGAGCGGGTGACCAGCTACCTACAGCGCTGTGGGGAGCAGGTAGACAGCGTGGAGCTGGGC
TTCACAGGCCTCACGGACGACATGGTCCTGCAGCTGCTGCCAGCACTCAGCACCCTGCCCCGCCTCACCA
CACTGGCACTCAATGGCAACCGGTTGACCCGGGCCGTGCTGCGCGACCTCACTGACATCCTTAAGGATCC
CAGCAAGTTCCCCAATGTCACGTGGATTGACCTGGGCAACAACGTGGACATCTTCTCCTTGCCCCAGCCC
TTCCTGCTCAGCCTGCGCAAGCGCTCCCCAAAGCAGGGCCACCTACCCACCATCCTGGAGCTGGGTGAGG
GCCCAGGCAGTGGGGAGGAGGTCCGGGAAGGGACAGTAGGCCAGGAGGACCCTGGAGGGGGCCCTGTGGC
ACCTGCCGAAGACCACCATGAGGGCAAGGAGACTGTAGCTGCAGCTCAGACGTGA

Translation (344 aa):
MGTRQTKGSLAERASPGAAPGPRRERPDFWASLLLRAGDKAGRAGAGMPPYHRRVGMVQELLRMVRQGRR
EEAGTLLQHLRQDLGMESTSLDDVLYRYASFRNLVDPITHDLIISLARYIHCPKPEGDALGAMEKLCRQL
TYHLSPHSQWRRHRGLVKRKPQACLKAVLAGSPPDNTVDLSGIPLTSRDLERVTSYLQRCGEQVDSVELG
FTGLTDDMVLQLLPALSTLPRLTTLALNGNRLTRAVLRDLTDILKDPSKFPNVTWIDLGNNVDIFSLPQP
FLLSLRKRSPKQGHLPTILELGEGPGSGEEVREGTVGQEDPGGGPVAPAEDHHEGKETVAAAQT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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