NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS4558.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4558.1 Public Homo sapiens 6 ACOT13 24 110 108 CCDS HistoryNCBI Gene:55856Re-query CCDS DB by CCDS ID:4558.1Re-query CCDS DB by GeneID:55856See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4558.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000230048.5 ENSP00000230048.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000230048.5Link to Ensembl Protein Viewer:ENSP00000230048.3Re-query CCDS DB by Nucleotide ID:ENST00000230048Re-query CCDS DB by Protein ID:ENSP00000230048
Original member Current member NCBI NM_018473.4 NP_060943.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018473.4Link to Protein Sequence:NP_060943.1Re-query CCDS DB by Nucleotide ID:NM_018473Re-query CCDS DB by Protein ID:NP_060943Link to BLAST:NP_060943.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060943.1 140 Q9NPJ3-1 140 100% 0 0

Chromosomal Locations for CCDS 4558.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 24667264 24667344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24697883 24698067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24701459 24701615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (423 nt):
ATGACCAGCATGACTCAGTCTCTGCGGGAGGTGATAAAGGCCATGACCAAGGCTCGCAATTTTGAGAGAG
TTTTGGGAAAGATTACTCTTGTCTCTGCTGCTCCTGGGAAAGTGATTTGTGAAATGAAAGTAGAAGAAGA
GCATACCAATGCAATAGGCACTCTCCACGGCGGTTTGACAGCCACGTTAGTAGATAACATATCAACAATG
GCTCTGCTATGCACGGAAAGGGGAGCACCCGGAGTCAGTGTCGATATGAACATAACGTACATGTCACCTG
CAAAATTAGGAGAAGATATAGTGATTACAGCACATGTTCTGAAGCAAGGAAAAACACTTGCATTTACCTC
TGTGGATCTGACCAACAAGGCCACAGGAAAATTAATAGCACAAGGAAGACACACAAAACACCTGGGAAAC
TGA

Translation (140 aa):
MTSMTQSLREVIKAMTKARNFERVLGKITLVSAAPGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTM
ALLCTERGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTNKATGKLIAQGRHTKHLGN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH