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Report for CCDS4540.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4540.1 Public Homo sapiens 6 FAM8A1 24 110 108 CCDS HistoryNCBI Gene:51439Re-query CCDS DB by CCDS ID:4540.1Re-query CCDS DB by GeneID:51439See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4540.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000259963.4 ENSP00000259963.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000259963.4Link to Ensembl Protein Viewer:ENSP00000259963.3Re-query CCDS DB by Nucleotide ID:ENST00000259963Re-query CCDS DB by Protein ID:ENSP00000259963
Original member Current member NCBI NM_016255.3 NP_057339.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016255.3Link to Protein Sequence:NP_057339.1Re-query CCDS DB by Nucleotide ID:NM_016255Re-query CCDS DB by Protein ID:NP_057339Link to BLAST:NP_057339.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057339.1 413 Q9UBU6 413 100% 0 0

Chromosomal Locations for CCDS 4540.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 17600410 17601121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17602590 17602710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17604906 17605029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17605874 17606013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17608195 17608339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1242 nt):
ATGGCCGAGGGGCCCGAGGAAGCCCGAGGCCACCCTCCCGGGCAGGACGATGGCGGAGGGGACCACGAGC
CCGTCCCTTCCCTGAGAGGCCCTCCTACCACCGCCGTCCCATGCCCCCGCGACGACCCCCAGGCCGAACC
CCAGGCCCCGGGCCGGCCCACAGCCCCGGGCCTCGCGGCTGCCGCCGCAGCCGACAAATTGGAGCCGCCG
CGCGAGCTCAGGAAGCGCGGGGAGGCGGCCTCCGGCTCCGGTGCAGAGCTGCAGGAGCAGGCGGGCTGCG
AGGCGCCCGAAGCCGCGGCGCCACGAGAGAGACCAGCTCGGCTGAGCGCCCGCGAGTACTCCCGGCAAGT
GCACGAGTGGCTGTGGCAGTCCTACTGCGGCTACCTCACCTGGCACAGCGGCCTGGCCGCCTTCCCAGCC
TACTGCAGCCCCCAGCCCTCCCCGCAGAGCTTCCCTTCGGGCGGCGCTGCAGTCCCCCAGGCCGCGGCGC
CGCCGCCCCCGCAGCTGGGCTATTACAACCCCTTCTACTTCCTGAGCCCCGGGGCCGCGGGGCCTGACCC
GCGGACAGCTGCCGGCATCAGCACCCCTGCTCCAGTCGCGGGCCTGGGACCCCGGGCTCCTCACGTGCAG
GCGTCGGTCCGGGCCACTCCAGTGACGAGGGTAGGATCCGCAGCCCCTTCGCGAAGCCCGAGCGAGACCG
GGCGACAGGCAGGCAGAGAATATGTTATTCCATCCTTGGCCCACAGATTTATGGCAGAGATGGTGGATTT
CTTTATTCTCTTCTTTATAAAAGCAACCATTGTCTTAAGCATTATGCACCTCAGTGGGATAAAGGATATC
TCTAAGTTTGCTATGCATTATATAATAGAAGAAATAGATGAAGACACATCAATGGAAGACTTGCAGAAAA
TGATGGTTGTGGCACTTATATACAGATTATTAGTTTGTTTCTATGAGATAATTTGCATTTGGGGAGCAGG
TGGAGCTACCCCAGGGAAGTTCCTGCTGGGGCTTCGAGTTGTGACATGTGATACATCAGTGCTTATTGCA
CCAAGTCGGGTTTTAGTGATTCCTTCCTCAAATGTTAGCATTACAACGTCCACTATCCGAGCTTTGATCA
AGAATTTTTCAATTGCTTCTTTTTTCCCTGCTTTCATCACACTGCTGTTTTTTCAGCATAATCGAACAGC
TTATGACATTGTAGCAGGAACCATTGTGGTAAAAAGAAATGGGGTCAGATGA

Translation (413 aa):
MAEGPEEARGHPPGQDDGGGDHEPVPSLRGPPTTAVPCPRDDPQAEPQAPGRPTAPGLAAAAAADKLEPP
RELRKRGEAASGSGAELQEQAGCEAPEAAAPRERPARLSAREYSRQVHEWLWQSYCGYLTWHSGLAAFPA
YCSPQPSPQSFPSGGAAVPQAAAPPPPQLGYYNPFYFLSPGAAGPDPRTAAGISTPAPVAGLGPRAPHVQ
ASVRATPVTRVGSAAPSRSPSETGRQAGREYVIPSLAHRFMAEMVDFFILFFIKATIVLSIMHLSGIKDI
SKFAMHYIIEEIDEDTSMEDLQKMMVVALIYRLLVCFYEIICIWGAGGATPGKFLLGLRVVTCDTSVLIA
PSRVLVIPSSNVSITTSTIRALIKNFSIASFFPAFITLLFFQHNRTAYDIVAGTIVVKRNGVR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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