NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS45373.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45373.1 Public Homo sapiens 16 LMF1 24 110 108 CCDS HistoryNCBI Gene:64788Re-query CCDS DB by CCDS ID:45373.1Re-query CCDS DB by GeneID:64788See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45373.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000262301.16 ENSP00000262301.12 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000262301.16Link to Ensembl Protein Viewer:ENSP00000262301.12Re-query CCDS DB by Nucleotide ID:ENST00000262301Re-query CCDS DB by Protein ID:ENSP00000262301
Original member Current member NCBI NM_022773.4 NP_073610.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022773.4Link to Protein Sequence:NP_073610.2Re-query CCDS DB by Nucleotide ID:NM_022773Re-query CCDS DB by Protein ID:NP_073610Link to BLAST:NP_073610.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_073610.2 567 Q96S06-1 567 100% 0 0

Chromosomal Locations for CCDS 45373.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 854532 854706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 868944 869056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 869883 870066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 870729 870882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 871161 871341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 879570 879737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 893007 893072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 910931 911079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 934244 934254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 954357 954666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 970788 970980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1704 nt):
ATGCGCCCTGACAGCCCAACAATGGCGGCGCCCGCGGAGTCGCTGAGGAGGCGGAAGACTGGGTACTCGG
ATCCGGAGCCTGAGTCGCCGCCCGCGCCGGGGCGTGGCCCCGCAGGCTCTCCGGCCCATCTCCACACGGG
CACCTTCTGGCTGACCCGGATCGTGCTCCTGAAGGCCCTAGCCTTCGTGTACTTCGTGGCATTCCTGGTG
GCTTTCCATCAGAACAAGCAGCTCATCGGTGACAGGGGGCTGCTTCCCTGCAGAGTGTTCCTGAAGAACT
TCCAGCAGTACTTCCAGGACAGGACGAGCTGGGAAGTCTTCAGCTACATGCCCACCATCCTCTGGCTGAT
GGACTGGTCAGACATGAACTCCAACCTGGACTTGCTGGCTCTTCTCGGACTGGGCATCTCGTCTTTCGTA
CTGATCACGGGCTGCGCCAACATGCTTCTCATGGCTGCCCTGTGGGGCCTCTACATGTCCCTGGTTAATG
TGGGCCATGTCTGGTACTCTTTCGGATGGGAGTCCCAGCTTCTGGAGACGGGGTTCCTGGGGATCTTCCT
GTGCCCTCTGTGGACGCTGTCAAGGCTGCCCCAGCATACCCCCACATCCCGGATTGTCCTGTGGGGCTTC
CGGTGGCTGATCTTCAGGATCATGCTTGGAGCAGGCCTGATCAAGATCCGGGGGGACCGGTGCTGGCGAG
ACCTCACCTGCATGGACTTCCACTATGAGACCCAGCCGATGCCCAATCCTGTGGCGTACTACCTGCACCA
CTCACCCTGGTGGTTCCATCGCTTCGAGACGCTCAGCAACCACTTCATCGAGCTCCTGGTGCCCTTCTTC
CTCTTCCTCGGCCGGCGGGCGTGCATCATCCACGGGGTGCTGCAGATCCTGTTCCAGGCCGTCCTCATCG
TCAGCGGGAACCTCAGCTTCCTGAACTGGCTGACTATGGTGCCCAGCCTGGCCTGCTTTGATGACGCCAC
CCTGGGATTCTTGTTCCCCTCTGGGCCAGGCAGCCTGAAGGACCGAGTTCTGCAGATGCAGAGGGACATC
CGAGGGGCCCGGCCCGAGCCCAGATTCGGCTCCGTGGTGCGGCGTGCAGCCAACGTCTCGCTGGGCGTCC
TGCTGGCCTGGCTCAGCGTGCCCGTGGTCCTCAACTTGCTGAGCTCCAGGCAGGTCATGAACACCCACTT
CAACTCTCTTCACATCGTCAACACTTACGGGGCCTTCGGAAGCATCACCAAGGAGCGGGCGGAGGTGATC
CTGCAGGGCACAGCCAGCTCCAACGCCAGCGCCCCCGATGCCATGTGGGAGGACTACGAGTTCAAGTGCA
AGCCAGGTGACCCCAGCAGACGGCCCTGCCTCATCTCCCCGTACCACTACCGCCTGGACTGGCTGATGTG
GTTCGCGGCCTTCCAGACCTACGAGCACAACGACTGGATCATCCACCTGGCTGGCAAGCTCCTGGCCAGC
GACGCCGAGGCCTTGTCCCTGCTGGCACACAACCCCTTCGCGGGCAGGCCCCCGCCCAGGTGGGTCCGAG
GAGAGCACTACAGGTACAAGTTCAGCCGTCCTGGGGGCAGGCACGCCGCCGAGGGCAAGTGGTGGGTGCG
GAAGAGGATCGGAGCCTACTTCCCTCCGCTCAGCCTGGAGGAGCTGAGGCCCTACTTCAGGGACCGTGGG
TGGCCTCTGCCCGGGCCCCTCTAG

Translation (567 aa):
MRPDSPTMAAPAESLRRRKTGYSDPEPESPPAPGRGPAGSPAHLHTGTFWLTRIVLLKALAFVYFVAFLV
AFHQNKQLIGDRGLLPCRVFLKNFQQYFQDRTSWEVFSYMPTILWLMDWSDMNSNLDLLALLGLGISSFV
LITGCANMLLMAALWGLYMSLVNVGHVWYSFGWESQLLETGFLGIFLCPLWTLSRLPQHTPTSRIVLWGF
RWLIFRIMLGAGLIKIRGDRCWRDLTCMDFHYETQPMPNPVAYYLHHSPWWFHRFETLSNHFIELLVPFF
LFLGRRACIIHGVLQILFQAVLIVSGNLSFLNWLTMVPSLACFDDATLGFLFPSGPGSLKDRVLQMQRDI
RGARPEPRFGSVVRRAANVSLGVLLAWLSVPVVLNLLSSRQVMNTHFNSLHIVNTYGAFGSITKERAEVI
LQGTASSNASAPDAMWEDYEFKCKPGDPSRRPCLISPYHYRLDWLMWFAAFQTYEHNDWIIHLAGKLLAS
DAEALSLLAHNPFAGRPPPRWVRGEHYRYKFSRPGGRHAAEGKWWVRKRIGAYFPPLSLEELRPYFRDRG
WPLPGPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH