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Report for CCDS45366.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45366.1 Public Homo sapiens 16 NHLRC4 24 110 108 CCDS HistoryNCBI Gene:283948Re-query CCDS DB by CCDS ID:45366.1Re-query CCDS DB by GeneID:283948See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45366.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000424439.3 ENSP00000410858.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000424439.3Link to Ensembl Protein Viewer:ENSP00000410858.2Re-query CCDS DB by Nucleotide ID:ENST00000424439Re-query CCDS DB by Protein ID:ENSP00000410858
Original member Current member EBI ENST00000540585.1 ENSP00000442223.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000540585.1Link to Ensembl Protein Viewer:ENSP00000442223.1Re-query CCDS DB by Nucleotide ID:ENST00000540585Re-query CCDS DB by Protein ID:ENSP00000442223
Original member Current member NCBI NM_001301159.2 NP_001288088.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001301159.2Link to Protein Sequence:NP_001288088.1Re-query CCDS DB by Nucleotide ID:NM_001301159Re-query CCDS DB by Protein ID:NP_001288088Link to BLAST:NP_001288088.1
Original member Current member NCBI NM_176677.3 NP_788850.1 Accepted alive Link to Nucleotide Sequence:NM_176677.3Link to Protein Sequence:NP_788850.1Re-query CCDS DB by Nucleotide ID:NM_176677Re-query CCDS DB by Protein ID:NP_788850Link to BLAST:NP_788850.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001288088.1 123 P0CG21 123 100% 0 0
NP_788850.1 123 P0CG21 123 100% 0 0

Chromosomal Locations for CCDS 45366.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 568048 568419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (372 nt):
ATGCTGGGTCTGGAGGGCCCCTGCTGGGTGGGCCCAGGGCCTGATGGGGGCCTTGCTGTGAGTGAGGAGT
TTGGGGATGTGAGGCTGTTTGGCAGTGCCCGCCAACCCCTGGGCTCCCTGGGGGGCTGGACGGGGCACAC
TTTCGGCTGCCCAGCGGGCATCTGCTCCAACTCAGAGGGCAATGTTATTGTGGCAGACGAGCAGAGGCGC
CAGGTGACCCTGTTTCCCCGGGCTGGGCCACCCATCTGCCTGGTGTCAGAGGGGCTTGGGCAGCCCTTGG
GAGTGGCCTGTGCACCCCAGGGCCAGCTCCTGGTGGCTGATGCCAAGGACAACTCCATCAAGGTGTACCA
GGGCCTCAAGGAGCTGGCCTGA

Translation (123 aa):
MLGLEGPCWVGPGPDGGLAVSEEFGDVRLFGSARQPLGSLGGWTGHTFGCPAGICSNSEGNVIVADEQRR
QVTLFPRAGPPICLVSEGLGQPLGVACAPQGQLLVADAKDNSIKVYQGLKELA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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