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Report for CCDS45284.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45284.1 Public Homo sapiens 15 SLC24A1 24 110 108 CCDS HistoryNCBI Gene:9187Re-query CCDS DB by CCDS ID:45284.1Re-query CCDS DB by GeneID:9187See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45284.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000261892.11 ENSP00000261892.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000261892.11Link to Ensembl Protein Viewer:ENSP00000261892.6Re-query CCDS DB by Nucleotide ID:ENST00000261892Re-query CCDS DB by Protein ID:ENSP00000261892
Original member Current member NCBI NM_004727.3 NP_004718.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004727.3Link to Protein Sequence:NP_004718.1Re-query CCDS DB by Nucleotide ID:NM_004727Re-query CCDS DB by Protein ID:NP_004718Link to BLAST:NP_004718.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004718.1 1099 O60721-1 1099 100% 0 0

Chromosomal Locations for CCDS 45284.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 65624081 65625970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65638128 65638181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65639595 65639703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65644427 65644513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65645612 65645703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65650382 65650942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65651670 65651759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65652642 65652808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65653830 65654079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3300 nt):
ATGGGGAAATTGATCAGGATGGGGCCGCAAGAGAGGTGGTTACTCCGGACAAAGCGGCTTCATTGGAGTC
GCCTCCTCTTCTTACTGGGAATGTTGATCATCGGTTCTACTTATCAGCACCTTAGGAGACCCCGGGGCCT
TTCCTCATTGTGGGCAGCAGTCTCTTCTCATCAGCCTATAAAACTGGCCAGTCGGGACCTCTCCAGTGAA
GAGATGATGATGATGAGCAGCAGCCCTTCAAAACCTAGCTCCGAAATGGGGGGTAAGATGCTGGTACCCC
AAGCCTCAGTGGGCAGTGATGAAGCAACACTGAGCATGACAGTGGAGAATATCCCCAGTATGCCTAAAAG
AACAGCCAAGATGATCCCAACAACAACCAAGAATAATTACAGCCCAACAGCAGCAGGTACAGAAAGAAGG
AAGGAAGACACCCCAACATCCAGTAGAACACTGACTTACTACACCTCAACTTCAAGCAGACAAATAGTAA
AAAAGTATACCCCAACACCCAGGGGAGAAATGAAGAGCTACAGCCCAACTCAAGTGAGGGAAAAGGTGAA
GTATACTCCTTCCCCACGTGGTAGAAGAGTAGGCACTTACGTGCCGTCCACATTCATGACAATGGAAACA
AGCCATGCGATCACCCCCAGGACAACAGTGAAAGACAGTGACATTACAGCAACCTATAAAATACTCGAAA
CCAACTCTCTTAAGAGAATAATGGAGGAAACCACCCCAACCACTCTCAAGGGAATGTTTGATAGCACCCC
AACTTTTCTGACACATGAGGTAGAAGCAAACGTCTTGACTTCTCCAAGGAGCGTCATGGAAAAAAACAAC
CTGTTTCCCCCCAGAAGAGTGGAAAGTAACAGCTCAGCCCATCCCTGGGGGTTAGTGGGAAAGAGCAACC
CGAAGACTCCCCAGGGAACAGTCCTGTTGCATACCCCAGCCACCTCTGAGGGGCAGGTGACAATAAGCAC
CATGACAGGCAGCAGCCCAGCAGAAACCAAAGCCTTCACTGCTGCCTGGAGTCTTAGGAATCCTTCACCC
AGGACCAGTGTATCAGCCATCAAAACAGCCCCAGCCATAGTCTGGAGGCTGGCAAAGAAACCTTCCACAG
CACCCAGCACCTCAACAACCCCTACGGTCAGGGCAAAGCTGACCATGCAGGTCCATCACTGTGTGGTTGT
GAAGCCAACCCCAGCCATGCTCACCACTCCCTCCCCAAGCCTCACAACAGCCCTGCTCCCAGAGGAGCTC
AGTCCTAGTCCCTCAGTGCTGCCTCCCAGCTTGCCAGACCTCCACCCCAAGGGAGAGTACCCCCCAGATC
TGTTCAGTGTGGAGGAGCGGCGGCAGGGCTGGGTGGTCCTGCACGTTTTTGGCATGATGTATGTGTTTGT
GGCCTTGGCCATTGTTTGCGACGAGTACTTCGTTCCAGCCCTGGGTGTCATCACAGACAAGCTGCAGATC
TCCGAGGATGTGGCAGGCGCCACATTCATGGCTGCTGGAGGCTCTGCTCCTGAGCTCTTCACCTCCCTCA
TCGGTGTCTTCATTTCCCACAGCAACGTGGGCATTGGTACCATTGTGGGCTCTGCTGTGTTCAACATTCT
CTTTGTCATTGGCACTTGTTCCCTCTTCTCCCGAGAGATCCTCAACCTCACCTGGTGGCCCTTATTCCGT
GATGTCTCCTTCTACATCCTTGACCTGATAATGCTCATCCTCTTCTTCCTGGACAGCCTCATTGCCTGGT
GGGAGAGCCTGCTGCTGCTGCTGGCCTATGCCTTCTATGTGTTCACCATGAAGTGGAACAAGCATATCGA
GGTCTGGGTGAAGGAGCAGCTCAGCAGGAGGCCAGTGGCCAAGGTCATGGCCTTAGAAGACCTCAGCAAG
CCGGGCGATGGGGCCATTGCGGTGGATGAGCTACAGGATAACAAGAAGCTGAAGCTCCCGTCCTTGCTGA
CCCGAGGGAGCAGCTCGACCTCTCTGCACAACAGCACCATCCGCAGCACCATCTACCAGCTCATGCTCCA
CAGCCTGGACCCCCTGAGGGAAGTTCGCCTTGCCAAGGAGAAGGAGGAGGAGAGCTTGAATCAAGGGGCC
AGAGCCCAACCCCAGGCCAAAGCAGAAAGCAAACCAGAAGAGGAGGAGCCAGCCAAGCTCCCTGCGGTCA
CGGTCACACCAGCCCCTGTTCCAGACATCAAGGGAGATCAGAAGGAGAATCCAGGCGGTCAGGAAGATGT
GGCTGAGGCCGAGAGCACAGGTGAAATGCCAGGCGAAGAGGGCGAAACTGCTGGTGAAGGTGAAACTGAA
GAGAAAAGTGGAGGTGAAACTCAACCAGAAGGTGAAGGTGAAACTGAAACACAAGGAAAAGGAGAAGAAT
GTGAAGATGAAAATGAAGCAGAAGGAAAAGGAGACAATGAAGGTGAAGATGAGGGTGAAATCCACGCAGA
AGATGGTGAAATGAAAGGTAATGAAGGTGAAACTGAAAGCCAGGAACTCAGTGCTGAAAATCACGGTGAA
GCCAAAAATGATGAGAAAGGTGTAGAAGATGGAGGGGGAAGTGATGGAGGGGATAGCGAAGAGGAGGAAG
AGGAGGAGGAAGAGCAGGAGGAAGAGGAGGAGGAGGAAGAGCAGGAGGAAGAGGAGGAGGAGGAGGAGGA
AGAGGAGGAGAAGGGAAATGAAGAGCCTCTGTCCCTGGACTGGCCTGAAACCAGGCAGAAGCAGGCCATT
TACCTCTTCCTTCTGCCCATCGTGTTCCCACTGTGGCTGACAGTCCCCGACGTCCGAAGGCAGGAGTCTA
GGAAGTTTTTTGTTTTCACCTTCCTGGGATCTATCATGTGGATAGCCATGTTCTCATACCTCATGGTGTG
GTGGGCTCACCAGGTTGGTGAAACAATAGGGATTTCTGAAGAGATCATGGGCCTGACAATCCTTGCAGCA
GGCACATCAATTCCTGACCTCATCACCAGTGTGATTGTCGCTCGAAAAGGCCTGGGAGACATGGCTGTGT
CAAGCTCTGTGGGCAGTAACATATTTGATATCACTGTGGGCTTGCCTGTTCCTTGGTTGCTTTTCTCTCT
TATCAATGGATTACAGCCAGTTCCAGTCAGCAGCAATGGCTTGTTTTGTGCAATTGTTTTGCTTTTTCTC
ATGCTTCTGTTTGTGATCTCTTCAATTGCGTCATGTAAATGGAGAATGAACAAGATCCTGGGCTTCACAA
TGTTCCTCCTTTACTTTGTATTCCTGATAATCAGTGTGATGTTAGAAGATCGAATCATATCCTGTCCTGT
ATCTGTCTGA

Translation (1099 aa):
MGKLIRMGPQERWLLRTKRLHWSRLLFLLGMLIIGSTYQHLRRPRGLSSLWAAVSSHQPIKLASRDLSSE
EMMMMSSSPSKPSSEMGGKMLVPQASVGSDEATLSMTVENIPSMPKRTAKMIPTTTKNNYSPTAAGTERR
KEDTPTSSRTLTYYTSTSSRQIVKKYTPTPRGEMKSYSPTQVREKVKYTPSPRGRRVGTYVPSTFMTMET
SHAITPRTTVKDSDITATYKILETNSLKRIMEETTPTTLKGMFDSTPTFLTHEVEANVLTSPRSVMEKNN
LFPPRRVESNSSAHPWGLVGKSNPKTPQGTVLLHTPATSEGQVTISTMTGSSPAETKAFTAAWSLRNPSP
RTSVSAIKTAPAIVWRLAKKPSTAPSTSTTPTVRAKLTMQVHHCVVVKPTPAMLTTPSPSLTTALLPEEL
SPSPSVLPPSLPDLHPKGEYPPDLFSVEERRQGWVVLHVFGMMYVFVALAIVCDEYFVPALGVITDKLQI
SEDVAGATFMAAGGSAPELFTSLIGVFISHSNVGIGTIVGSAVFNILFVIGTCSLFSREILNLTWWPLFR
DVSFYILDLIMLILFFLDSLIAWWESLLLLLAYAFYVFTMKWNKHIEVWVKEQLSRRPVAKVMALEDLSK
PGDGAIAVDELQDNKKLKLPSLLTRGSSSTSLHNSTIRSTIYQLMLHSLDPLREVRLAKEKEEESLNQGA
RAQPQAKAESKPEEEEPAKLPAVTVTPAPVPDIKGDQKENPGGQEDVAEAESTGEMPGEEGETAGEGETE
EKSGGETQPEGEGETETQGKGEECEDENEAEGKGDNEGEDEGEIHAEDGEMKGNEGETESQELSAENHGE
AKNDEKGVEDGGGSDGGDSEEEEEEEEEQEEEEEEEEQEEEEEEEEEEEEKGNEEPLSLDWPETRQKQAI
YLFLLPIVFPLWLTVPDVRRQESRKFFVFTFLGSIMWIAMFSYLMVWWAHQVGETIGISEEIMGLTILAA
GTSIPDLITSVIVARKGLGDMAVSSSVGSNIFDITVGLPVPWLLFSLINGLQPVPVSSNGLFCAIVLLFL
MLLFVISSIASCKWRMNKILGFTMFLLYFVFLIISVMLEDRIISCPVSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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