NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS45249.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45249.1 Public Homo sapiens 15 EPB42 24 110 108 CCDS HistoryNCBI Gene:2038Re-query CCDS DB by CCDS ID:45249.1Re-query CCDS DB by GeneID:2038See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45249.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000441366.7 ENSP00000396616.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000441366.7Link to Ensembl Protein Viewer:ENSP00000396616.2Re-query CCDS DB by Nucleotide ID:ENST00000441366Re-query CCDS DB by Protein ID:ENSP00000396616
Original member Current member NCBI NM_001114134.2 NP_001107606.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001114134.2Link to Protein Sequence:NP_001107606.1Re-query CCDS DB by Nucleotide ID:NM_001114134Re-query CCDS DB by Protein ID:NP_001107606Link to BLAST:NP_001107606.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001107606.1 691 P16452-1 691 100% 0 0

Chromosomal Locations for CCDS 45249.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 43197302 43197464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43201844 43201977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43203115 43203275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43206330 43206629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43207199 43207441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43208230 43208333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43208637 43208775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43209274 43209451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43210335 43210439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43211416 43211534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43215095 43215328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43216268 43216453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43220816 43220825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2076 nt):
ATGGGACAGGCCCTGGGTATCAAGAGCTGTGACTTTCAGGCAGCAAGAAACAATGAGGAGCACCACACCA
AGGCCCTCAGCTCCCGGCGCCTCTTTGTGAGGAGGGGGCAGCCCTTCACCATCATCCTGTACTTCCGCGC
TCCAGTCCGTGCATTTCTGCCTGCCCTGAAGAAGGTGGCCCTCACTGCACAAACTGGAGAGCAGCCTTCC
AAGATCAACAGGACCCAAGCCACATTCCCAATTTCCAGTCTGGGGGACCGAAAGTGGTGGAGTGCAGTGG
TGGAGGAGAGAGATGCCCAGTCCTGGACCATCTCTGTGACCACACCTGCGGACGCTGTCATTGGCCACTA
CTCGCTTCTGCTGCAGGTCTCAGGCAGGAAGCAACTCCTCTTGGGTCAGTTCACACTGCTTTTTAACCCC
TGGAATAGAGAGGATGCTGTGTTCCTGAAGAATGAGGCTCAGCGCATGGAGTACTTGTTGAACCAGAATG
GTCTCATCTACCTGGGTACAGCTGACTGCATCCAGGCAGAGTCCTGGGACTTTGGCCAGTTCGAGGGGGA
TGTCATTGACCTCAGCCTGCGCTTGCTGAGCAAGGACAAGCAGGTAGAGAAGTGGAGCCAGCCGGTGCAC
GTGGCCCGTGTGTTGGGTGCCTTGCTGCATTTTCTCAAGGAGCAGAGGGTCCTGCCCACCCCGCAGACCC
AGGCCACCCAGGAAGGGGCCTTGCTGAACAAGCGCCGGGGCAGCGTGCCCATCCTGCGGCAGTGGCTCAC
CGGCCGAGGCCGACCTGTGTATGATGGCCAGGCCTGGGTGTTGGCTGCTGTTGCTTGCACAGTGCTGCGA
TGCCTGGGAATCCCTGCCCGCGTGGTGACCACGTTTGCCTCAGCACAGGGCACCGGTGGGCGTCTTCTCA
TAGATGAATACTATAATGAGGAGGGACTTCAGAACGGAGAAGGCCAGAGAGGCAGAATCTGGATCTTCCA
GACTTCCACAGAGTGCTGGATGACGCGGCCTGCCTTGCCCCAGGGTTATGATGGATGGCAGATTCTGCAC
CCAAGTGCTCCTAATGGAGGTGGAGTCCTGGGGTCCTGTGATCTGGTGCCGGTCAGAGCAGTCAAGGAGG
GGACGCTGGGGCTGACCCCAGCAGTGTCAGACCTTTTTGCTGCCATAAATGCCTCATGTGTGGTCTGGAA
GTGCTGTGAGGATGGGACACTGGAGTTGACTGACTCCAACACAAAGTATGTTGGCAACAACATCAGCACC
AAGGGTGTGGGCAGTGACCGCTGCGAGGACATCACTCAGAACTACAAGTATCCTGAAGGGTCTCTTCAGG
AAAAAGAGGTGCTGGAGAGAGTCGAGAAAGAGAAAATGGAACGTGAGAAAGACAACGGCATCCGTCCTCC
CAGTCTCGAGACTGCCAGTCCTCTGTACCTGCTCTTGAAAGCACCCAGCTCCCTACCCCTGAGAGGGGAT
GCCCAGATCTCAGTGACGCTGGTTAATCACAGTGAGCAGGAGAAGGCAGTGCAGCTGGCAATTGGGGTCC
AGGCTGTACACTACAACGGTGTCCTTGCTGCCAAGCTCTGGAGGAAGAAGCTGCACCTCACGCTCAGTGC
CAACCTGGAAAAGATAATAACCATCGGCCTGTTCTTCTCCAATTTTGAGCGAAACCCACCCGAGAACACC
TTCCTTAGACTCACCGCCATGGCAACACACTCTGAATCCAACCTTAGCTGCTTTGCTCAGGAAGACATTG
CCATTTGTAGACCACACCTTGCCATCAAGATGCCAGAGAAAGCAGAGCAGTATCAACCCCTCACAGCCTC
AGTCAGCCTCCAGAACTCCCTAGATGCCCCCATGGAGGACTGTGTGATCTCCATCCTGGGAAGGGGGCTC
ATTCACAGAGAGAGGAGCTACAGATTCCGTTCAGTGTGGCCTGAAAACACCATGTGTGCCAAGTTCCAGT
TCACGCCAACACATGTGGGGCTCCAGAGACTCACTGTGGAAGTGGACTGCAACATGTTCCAGAACCTAAC
CAACTATAAAAGCGTCACCGTGGTAGCCCCTGAACTATCAGCTTAA

Translation (691 aa):
MGQALGIKSCDFQAARNNEEHHTKALSSRRLFVRRGQPFTIILYFRAPVRAFLPALKKVALTAQTGEQPS
KINRTQATFPISSLGDRKWWSAVVEERDAQSWTISVTTPADAVIGHYSLLLQVSGRKQLLLGQFTLLFNP
WNREDAVFLKNEAQRMEYLLNQNGLIYLGTADCIQAESWDFGQFEGDVIDLSLRLLSKDKQVEKWSQPVH
VARVLGALLHFLKEQRVLPTPQTQATQEGALLNKRRGSVPILRQWLTGRGRPVYDGQAWVLAAVACTVLR
CLGIPARVVTTFASAQGTGGRLLIDEYYNEEGLQNGEGQRGRIWIFQTSTECWMTRPALPQGYDGWQILH
PSAPNGGGVLGSCDLVPVRAVKEGTLGLTPAVSDLFAAINASCVVWKCCEDGTLELTDSNTKYVGNNIST
KGVGSDRCEDITQNYKYPEGSLQEKEVLERVEKEKMEREKDNGIRPPSLETASPLYLLLKAPSSLPLRGD
AQISVTLVNHSEQEKAVQLAIGVQAVHYNGVLAAKLWRKKLHLTLSANLEKIITIGLFFSNFERNPPENT
FLRLTAMATHSESNLSCFAQEDIAICRPHLAIKMPEKAEQYQPLTASVSLQNSLDAPMEDCVISILGRGL
IHRERSYRFRSVWPENTMCAKFQFTPTHVGLQRLTVEVDCNMFQNLTNYKSVTVVAPELSA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH