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Report for CCDS45243.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45243.1 Public Homo sapiens 15 TMEM87A 24 110 108 CCDS HistoryNCBI Gene:25963Re-query CCDS DB by CCDS ID:45243.1Re-query CCDS DB by GeneID:25963See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45243.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000307216.10 ENSP00000305894.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000307216.10Link to Ensembl Protein Viewer:ENSP00000305894.6Re-query CCDS DB by Nucleotide ID:ENST00000307216Re-query CCDS DB by Protein ID:ENSP00000305894
Original member Current member NCBI NM_001110503.3 NP_001103973.1 Accepted alive Link to Nucleotide Sequence:NM_001110503.3Link to Protein Sequence:NP_001103973.1Re-query CCDS DB by Nucleotide ID:NM_001110503Re-query CCDS DB by Protein ID:NP_001103973Link to BLAST:NP_001103973.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001103973.1 181 Q8NBN3-2 181 100% 0 0

Chromosomal Locations for CCDS 45243.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 42258949 42258990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42260958 42261002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42261196 42261249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42264090 42264203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42267947 42268032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42272063 42272123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42273255 42273398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (546 nt):
ATGGCGGCGGCTGCGTGGCTTCAGGTGTTGCCTGTCATTCTTCTGCTTCTGGGAGCTCACCCGTCACCAC
TGTCGTTTTTCAGTGCGGGACCGGCAACCGTAGCTGCTGCCGACCGGTCCAAATGGCACATTCCGATACC
GTCGGGGAAAAATTATTTTAGTTTTGGAAAGATCCTCTTCAGAAATACCACTATCTTCCTGAAGTTTGAT
GGAGAACCTTGTGACCTGTCTTTGAATATAACCTGGTATCTGAAAAGCGCTGATTGTTACAATGAAATCT
ATAACTTCAAGGCAGAAGAAGTAGAGTTGTATTTGGAAAAACTTAAGGAAAAAAGAGGCTTGTCTGGGAA
ATATCAAACATCATCAAAATTGTTCCAGAACTGCAGTGAACTCTTTAAAACACAGACCTTTTCTGGAGAT
TTTATGCATCGACTGCCTCTTTTAGGAGAAAAACAGGAGGCTAAGGAGAATGGAACAAACCTTACCTTTA
TTGGAGACAAAACCATTCAGATGCCTTTCTTGAAGAAACATTTCTTGGATTGTTGA

Translation (181 aa):
MAAAAWLQVLPVILLLLGAHPSPLSFFSAGPATVAAADRSKWHIPIPSGKNYFSFGKILFRNTTIFLKFD
GEPCDLSLNITWYLKSADCYNEIYNFKAEEVELYLEKLKEKRGLSGKYQTSSKLFQNCSELFKTQTFSGD
FMHRLPLLGEKQEAKENGTNLTFIGDKTIQMPFLKKHFLDC


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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