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Report for CCDS452.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
452.2 Public Homo sapiens 1 ZFP69B 24 110 108 CCDS HistoryNCBI Gene:65243Re-query CCDS DB by CCDS ID:452.2Re-query CCDS DB by GeneID:65243See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 452.1
The coding region has been updated to represent an alternate splice pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 452.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361584.5 ENSP00000354547.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000361584.5Link to Ensembl Protein Viewer:ENSP00000354547.4Re-query CCDS DB by Nucleotide ID:ENST00000361584Re-query CCDS DB by Protein ID:ENSP00000354547
Original member Current member EBI ENST00000411995.6 ENSP00000399664.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000411995.6Link to Ensembl Protein Viewer:ENSP00000399664.2Re-query CCDS DB by Nucleotide ID:ENST00000411995Re-query CCDS DB by Protein ID:ENSP00000399664
Original member Current member NCBI NM_001369565.1 NP_001356494.1 Accepted alive Link to Nucleotide Sequence:NM_001369565.1Link to Protein Sequence:NP_001356494.1Re-query CCDS DB by Nucleotide ID:NM_001369565Re-query CCDS DB by Protein ID:NP_001356494Link to BLAST:NP_001356494.1
Original member Current member NCBI NM_023070.3 NP_075558.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_023070.3Link to Protein Sequence:NP_075558.2Re-query CCDS DB by Nucleotide ID:NM_023070Re-query CCDS DB by Protein ID:NP_075558Link to BLAST:NP_075558.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001356494.1 534 Q9UJL9-1 534 100% 0 0
NP_075558.2 534 Q9UJL9-1 534 100% 0 0

Chromosomal Locations for CCDS 452.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 40450962 40451088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40454203 40454288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40456945 40457071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40457344 40457439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40462421 40463589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1605 nt):
ATGCTGCAGCAGCTCCTGATCACCCTGCCCACCGAGGCCAGCACCTGGGTGAAGTTGCGTCATCCAAAGG
CGGCCACGGAGCGGGTGGCCCTGTGGGAGGATGTGACTAAGATGTTTAAAGCAGAAGCTCTGCTGTCTCA
GGATGCTGATGAGACCCAGGGCGAAAGTTTAGAGAGTAGAGTGACCCTTGGATCCCTGACAGCAGAATCC
CAGGAACTGTTAACCTTCAAGGACGTATCTGTGGACTTCACTCAGGAGGAGTGGGGGCAGCTGGCCCCTG
CTCACCGGAATCTGTACCGGGAGGTGATGCTGGAGAACTATGGGAACCTGGTCTCAGTGGGATGTCAGCT
TTCCAAACCTGGCGTGATTTCCCAGTTGGAGAAAGGAGAAGAACCATGGCTGATGGAGAGAGATATTTCA
GGAGTTCCAAGTTCAGACTTGAAGAGCAAAACAAAAACCAAAGAGTCAGCCTTACAGAATGATATTTCGT
GGGAAGAACTACATTGTGGCCTAATGATGGAAAGATTTACAAAAGGAAGCAGCATGTATTCCACCTTGGG
AAGAATCTCCAAATGTAATAAGCTAGAAAGCCAACAAGAGAACCAAAGAATGGGTAAGGGGCAAATCCCC
CTGATGTGCAAGAAAACATTCACTCAGGAGAGAGGCCAAGAGTCTAATAGATTTGAGAAAAGAATTAATG
TGAAGTCAGAAGTTATGCCAGGACCAATAGGTCTTCCAAGAAAAAGAGATCGTAAATATGACACACCTGG
AAAGAGAAGCAGATACAACATAGATTTAGTTAATCATTCAAGGAGTTATACAAAAATGAAAACCTTTGAG
TGTAATATTTGTGAAAAAATCTTCAAACAGCTTATTCACCTTACTGAACACATGAGAATTCATACCGGGG
AGAAACCTTTCAGATGTAAGGAATGTGGAAAAGCCTTTAGCCAAAGTTCATCTCTTATTCCGCATCAGAG
AATTCATACTGGTGAGAAACCCTATGAATGTAAGGAGTGTGGGAAAACCTTCAGACATCCTTCATCGCTT
ACTCAACATGTTAGAATTCATACCGGGGAAAAGCCCTATGAATGTAGGGTATGTGAGAAAGCCTTCAGCC
AGAGCATTGGACTGATCCAGCATTTGAGAACTCATGTTAGAGAGAAACCTTTTACATGCAAAGACTGTGG
AAAAGCGTTTTTCCAGATTAGACACCTTAGGCAACATGAGATTATTCATACTGGTGTGAAACCCTATATT
TGTAATGTATGTAGTAAAACCTTCAGCCATAGTACATACCTAACTCAACACCAGAGAACTCATACTGGAG
AAAGACCATATAAATGTAAGGAATGTGGGAAAGCCTTTAGCCAGAGAATACATCTTTCTATCCATCAGAG
AGTCCATACTGGAGTAAAACCTTATGAATGCAGTCATTGTGGGAAAGCCTTTAGGCATGATTCATCCTTT
GCTAAACATCAGAGAATTCATACTGGAGAAAAACCTTATGATTGTAATGAGTGTGGAAAAGCCTTCAGCT
GTAGTTCATCCCTTATTAGACACTGCAAAACACATTTAAGAAATACCTTCAGCAATGTTGTGTGA

Translation (534 aa):
MLQQLLITLPTEASTWVKLRHPKAATERVALWEDVTKMFKAEALLSQDADETQGESLESRVTLGSLTAES
QELLTFKDVSVDFTQEEWGQLAPAHRNLYREVMLENYGNLVSVGCQLSKPGVISQLEKGEEPWLMERDIS
GVPSSDLKSKTKTKESALQNDISWEELHCGLMMERFTKGSSMYSTLGRISKCNKLESQQENQRMGKGQIP
LMCKKTFTQERGQESNRFEKRINVKSEVMPGPIGLPRKRDRKYDTPGKRSRYNIDLVNHSRSYTKMKTFE
CNICEKIFKQLIHLTEHMRIHTGEKPFRCKECGKAFSQSSSLIPHQRIHTGEKPYECKECGKTFRHPSSL
TQHVRIHTGEKPYECRVCEKAFSQSIGLIQHLRTHVREKPFTCKDCGKAFFQIRHLRQHEIIHTGVKPYI
CNVCSKTFSHSTYLTQHQRTHTGERPYKCKECGKAFSQRIHLSIHQRVHTGVKPYECSHCGKAFRHDSSF
AKHQRIHTGEKPYDCNECGKAFSCSSSLIRHCKTHLRNTFSNVV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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