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Report for CCDS44942.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44942.1 Public Homo sapiens 12 RAB3IP 24 110 108 CCDS HistoryNCBI Gene:117177Re-query CCDS DB by CCDS ID:44942.1Re-query CCDS DB by GeneID:117177See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44942.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000553099.5 ENSP00000448027.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000553099.5Link to Ensembl Protein Viewer:ENSP00000448027.1Re-query CCDS DB by Nucleotide ID:ENST00000553099Re-query CCDS DB by Protein ID:ENSP00000448027
Original member Current member EBI ENST00000551641.5 ENSP00000448773.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000551641.5Link to Ensembl Protein Viewer:ENSP00000448773.1Re-query CCDS DB by Nucleotide ID:ENST00000551641Re-query CCDS DB by Protein ID:ENSP00000448773
Original member Current member NCBI NM_001024647.3 NP_001019818.1 Accepted alive Link to Nucleotide Sequence:NM_001024647.3Link to Protein Sequence:NP_001019818.1Re-query CCDS DB by Nucleotide ID:NM_001024647Re-query CCDS DB by Protein ID:NP_001019818Link to BLAST:NP_001019818.1
Original member Current member NCBI NM_001278402.1 NP_001265331.1 Accepted alive Link to Nucleotide Sequence:NM_001278402.1Link to Protein Sequence:NP_001265331.1Re-query CCDS DB by Nucleotide ID:NM_001278402Re-query CCDS DB by Protein ID:NP_001265331Link to BLAST:NP_001265331.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001019818.1 254 Q96QF0-8 254 100% 0 0
NP_001265331.1 254 Q96QF0-8 254 100% 0 0

Chromosomal Locations for CCDS 44942.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 69794449 69794514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69795141 69795344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69800209 69800337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69801609 69801721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69812778 69812877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69812964 69813033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69815364 69815446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (765 nt):
ATGGTGAGAGAAGCAAATATCAAGCAGGCAACAGCAGAAAAACAGCTAAAAGAAGCACAAGGAAAAATTG
ATGTACTTCAAGCTGAAGTAGCTGCATTGAAGACACTTGTATTGTCCAGTTCTCCAACATCACCTACGCA
GGAGCCTTTGCCAGGTGGAAAGACACCTTTTAAAAAGGGGCATACAAGAAATAAAAGCACAAGCAGTGCT
ATGAGTGGCAGTCATCAGGACCTCAGTGTGATACAGCCAATTGTAAAAGACTGCAAAGAGGCTGACTTAT
CCTTGTATAATGAATTCCGATTGTGGAAGGATGAGCCCACAATGGACAGGACGTGTCCTTTCTTAGACAA
AATCTACCAGGAAGATATCTTTCCATGTTTAACATTCTCAAAAAGTGAGTTGGCTTCAGCTGTTCTGGAG
GCTGTGGAAAACAATACTCTAAGCATTGAACCAGTGGGATTACAACCTATCCGGTTTGTGAAAGCTTCTG
CAGTTGAATGCGGAGGACCAAAAAAATGTGCTCTCACTGGCCAGAGTAAGTCCTGTAAACACAGAATTAA
ATTAGGGGACTCAAGCAACTATTATTATATTTCTCCTTTTTGCAGATACAGGATCACTTCTGTATGTAAC
TTTTTTACATACATTCGATACATTCAGCAGGGACTCGTGAAACAGCAGGATGTTGATCAGATGTTTTGGG
AGGTTATGCAGTTGAGAAAAGAGATGTCATTGGCAAAGCTGGGTTATTTCAAAGAGGAACTCTGA

Translation (254 aa):
MVREANIKQATAEKQLKEAQGKIDVLQAEVAALKTLVLSSSPTSPTQEPLPGGKTPFKKGHTRNKSTSSA
MSGSHQDLSVIQPIVKDCKEADLSLYNEFRLWKDEPTMDRTCPFLDKIYQEDIFPCLTFSKSELASAVLE
AVENNTLSIEPVGLQPIRFVKASAVECGGPKKCALTGQSKSCKHRIKLGDSSNYYYISPFCRYRITSVCN
FFTYIRYIQQGLVKQQDVDQMFWEVMQLRKEMSLAKLGYFKEEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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