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Report for CCDS44925.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44925.2 Public Homo sapiens 12 NACA 24 110 108 CCDS HistoryNCBI Gene:4666Re-query CCDS DB by CCDS ID:44925.2Re-query CCDS DB by GeneID:4666See the combined annotation on chromosome 12 in Sequence Viewer

Public Note for CCDS 44925.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript data.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 44925.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000550952.6 ENSP00000448035.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000550952.6Link to Ensembl Protein Viewer:ENSP00000448035.1Re-query CCDS DB by Nucleotide ID:ENST00000550952Re-query CCDS DB by Protein ID:ENSP00000448035
Original member Current member NCBI NM_001113203.3 NP_001106674.2 Accepted alive Link to Nucleotide Sequence:NM_001113203.3Link to Protein Sequence:NP_001106674.2Re-query CCDS DB by Nucleotide ID:NM_001113203Re-query CCDS DB by Protein ID:NP_001106674Link to BLAST:NP_001106674.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001106674.2 925 E9PAV3-2 925 100% 0 0

Chromosomal Locations for CCDS 44925.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 56712538 56712552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 56712786 56712908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 56713062 56713190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 56713537 56713683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 56714362 56714439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 56714602 56714687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 56715871 56716206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 56719537 56719596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 56719726 56721459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 56724452 56724521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2778 nt):
ATGCCCGGCGAAGCCACAGAAACCGTCCCTGCTACAGAGCAGGAGTTGCCGCAGCCCCAGGCTGAGACAG
CTGTGCTACCTATGTCTTCAGCCTTGAGTGTCACTGCTGCCTTAGGGCAGCCTGGACCTACCCTCCCCCC
TCCTTGCTCTCCTGCCCCACAACAGTGCCCTCTCTCAGCTGCTAACCAGGCTTCCCCATTCCCTTCCCCC
TCTACTATTGCCTCGACCCCTTTAGAAGTTCCTTTTCCCCAGTCATCCTCTGGAACAGCCCTACCTTTGG
GAACTGCCCCTGAAGCCCCAACCTTCCTACCAAACCTAATAGGGCCTCCCATCTCCCCAGCTGCCTTAGC
TCTAGCCTCTCCCATGATAGCTCCAACTCTGAAAGGGACCCCTTCCTCTTCAGCTCCCTTAGCTCTGGTT
GCCCTGGCTCCCCACTCAGTTCAGAAGAGTTCTGCTTTTCCACCTAACCTTCTTACTTCACCTCCTTCAG
TGGCTGTAGCTGAGTCAGGGTCAGTGATAACTCTGTCAGCTCCCATTGCTCCCTCAGAACCAAAGACTAA
TCTTAATAAAGTTCCCTCTGAGGTAGTCCCTAATCCAAAAGGCACCCCCAGCCCTCCATGTATAGTCAGT
ACTGTTCCTTACCACTGTGTGACTCCCATGGCCTCTATTCAATCTGGAGTGGCCTCCCTTCCTCAGACAA
CACCCACAACTACCCTAGCCATCGCTTCCCCTCAAGTCAAAGATACCACCATTTCCTCAGTTCTGATTTC
TCCACAAAACCCAGGAAGCCTCAGCCTGAAGGGGCCTGTTAGTCCACCTGCTGCCTTATCTCTTTCAACT
CAGTCTCTTCCTGTGGTGACCTCTTCTCAAAAGACTGCGGGTCCCAACACCCCCCCAGATTTTCCCATTT
CTCTGGGCTCTCATCTTGCACCTTTACATCAGAGTTCTTTTGGTTCTGTCCAACTTTTAGGTCAAACAGG
TCCTAGTGCTTTGTCAGACCCTACAGTGAAGACCATTTCTGTAGATCATTCTTCCACAGGGGCCTCTTAT
CCTTCTCAGAGATCTGTAATTCCTCCCCTTCCTTCCAGAAATGAGGTAGTTCCTGCTACTGTGGCTGCCT
TTCCAGTGGTGGCTCCATCTGTTGACAAAGGTCCCTCTACCATCTCTAGCATAACCTGCAGCCCTTCTGG
CTCCTTAAATGTAGCTACCTCTTTTTCATTATCTCCTACAACCTCTCTCATTCTCAAAAGCTCTCCTAAT
GCCACTTATCATTATCCTTTAGTGGCCCAAATGCCCGTTTCTTCTGTTGGAACCACCCCACTTGTGGTGA
CTAACCCCTGTACAATTGCTGCAGCACCTACTACTACCTTTGAGGTAGCTACTTGTGTTTCTCCTCCAAT
GTCATCAGGTCCCATAAGTAACATAGAACCAACTTCCCCTGCTGCCTTGGTTATGGCACCTGTGGCTCCC
AAAGAGCCTTCTACTCAAGTAGCAACCACTCTGAGGATACCAGTCTCTCCTCCTCTGCCAGACCCTGAAG
ACCTCAAAAATCTCCCCAGTTCAGTATTGGTTAAATTTCCAACACAAAAAGACCTCCAAACTGTACCTGC
CTCTCTTGAAGGAGCCCCTTTCTCTCCAGCCCAAGCAGGACTCACCACCAAGAAAGACCCTACTGTATTA
CCGTTAGTCCAGGCAGCCCCTAAAAATTCCCCTTCTTTCCAAAGTACATCCTCTTCTCCAGAGATACCTC
TTTCTCCTGAAGCCACCCTAGCAAAGAAAAGCCTTGGGGAGCCTCTCCCTATAGTGGCTGCATTTCCTTT
GGAAAGTGCTGACCCTGCCGGGGTGGCTCCCACAACTGCCAAAGCAGCTGCCTTTGAGAAGGTCCTTCCT
AAACCTGAATCAGCATCTGTCTCTGCAGCACCCTCCCCACCAGTCTCTCTGCCTCTTGCTCCCTCCCCAG
TTCCCACTCTGCCTCCTAAACAGCAATTTCTGCCGTCCTCTCCTGGGCTGGTGTTGGAATCACCCTCTAA
ACCCCTTGCCCCTGCTGATGAGGATGAGCTGCTGCCTCTGATTCCCCCGGAACCAATCTCTGGGGGAGTG
CCTTTCCAGTCGGTCCTCGTCAACATGCCCACCCCTAAATCTGCTGGAATCCCTGTCCCAACCCCCTCTG
CCAAGCAACCTGTTACGAAGAACAACAAGGGGTCTGGAACAGAATCTGACAGTGATGAATCAGTACCAGA
GCTTGAAGAACAGGATTCCACCCAGGCAACCACACAACAAGCCCAGCTGGCGGCAGCAGCTGAAATTGAT
GAAGAACCAGTCAGTAAAGCAAAACAGAGTCGGAGTGAAAAGAAGGCACGGAAGGCTATGTCCAAACTGG
GTCTTCGGCAGGTTACAGGAGTTACTAGAGTCACTATCCGGAAATCTAAGAATATCCTCTTTGTCATCAC
AAAACCAGATGTCTACAAGAGCCCTGCTTCAGATACTTACATAGTTTTTGGGGAAGCCAAGATCGAAGAT
TTATCCCAGCAAGCACAACTAGCAGCTGCTGAGAAATTCAAAGTTCAAGGTGAAGCTGTCTCAAACATTC
AAGAAAACACACAGACTCCAACTGTACAAGAGGAGAGTGAAGAGGAAGAGGTCGATGAAACAGGTGTAGA
AGTTAAGGACATTGAATTGGTCATGTCACAAGCAAATGTGTCGAGAGCAAAGGCAGTCCGAGCCCTGAAG
AACAACAGTAATGATATTGTAAATGCGATTATGGAATTAACAATGTAA

Translation (925 aa):
MPGEATETVPATEQELPQPQAETAVLPMSSALSVTAALGQPGPTLPPPCSPAPQQCPLSAANQASPFPSP
STIASTPLEVPFPQSSSGTALPLGTAPEAPTFLPNLIGPPISPAALALASPMIAPTLKGTPSSSAPLALV
ALAPHSVQKSSAFPPNLLTSPPSVAVAESGSVITLSAPIAPSEPKTNLNKVPSEVVPNPKGTPSPPCIVS
TVPYHCVTPMASIQSGVASLPQTTPTTTLAIASPQVKDTTISSVLISPQNPGSLSLKGPVSPPAALSLST
QSLPVVTSSQKTAGPNTPPDFPISLGSHLAPLHQSSFGSVQLLGQTGPSALSDPTVKTISVDHSSTGASY
PSQRSVIPPLPSRNEVVPATVAAFPVVAPSVDKGPSTISSITCSPSGSLNVATSFSLSPTTSLILKSSPN
ATYHYPLVAQMPVSSVGTTPLVVTNPCTIAAAPTTTFEVATCVSPPMSSGPISNIEPTSPAALVMAPVAP
KEPSTQVATTLRIPVSPPLPDPEDLKNLPSSVLVKFPTQKDLQTVPASLEGAPFSPAQAGLTTKKDPTVL
PLVQAAPKNSPSFQSTSSSPEIPLSPEATLAKKSLGEPLPIVAAFPLESADPAGVAPTTAKAAAFEKVLP
KPESASVSAAPSPPVSLPLAPSPVPTLPPKQQFLPSSPGLVLESPSKPLAPADEDELLPLIPPEPISGGV
PFQSVLVNMPTPKSAGIPVPTPSAKQPVTKNNKGSGTESDSDESVPELEEQDSTQATTQQAQLAAAAEID
EEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIED
LSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALK
NNSNDIVNAIMELTM


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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