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Report for CCDS44840.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44840.2 Public Homo sapiens 12 PLEKHA5 24 110 108 CCDS HistoryNCBI Gene:54477Re-query CCDS DB by CCDS ID:44840.2Re-query CCDS DB by GeneID:54477See the combined annotation on chromosome 12 in Sequence Viewer

Public Note for CCDS 44840.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 44840.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000538714.5 ENSP00000439673.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000538714.5Link to Ensembl Protein Viewer:ENSP00000439673.1Re-query CCDS DB by Nucleotide ID:ENST00000538714Re-query CCDS DB by Protein ID:ENSP00000439673
Original member Current member NCBI NM_001143821.3 NP_001137293.2 Accepted alive Link to Nucleotide Sequence:NM_001143821.3Link to Protein Sequence:NP_001137293.2Re-query CCDS DB by Nucleotide ID:NM_001143821Re-query CCDS DB by Protein ID:NP_001137293Link to BLAST:NP_001137293.2
Original member Current member NCBI NM_001385968.1 NP_001372897.1 Accepted alive Link to Nucleotide Sequence:NM_001385968.1Link to Protein Sequence:NP_001372897.1Re-query CCDS DB by Nucleotide ID:NM_001385968Re-query CCDS DB by Protein ID:NP_001372897Link to BLAST:NP_001372897.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001137293.2 1174 Q9HAU0-2 1174 100% 0 0
NP_001372897.1 1174 Q9HAU0-2 1174 100% 0 0

Chromosomal Locations for CCDS 44840.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 19129800 19129888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 19130051 19130130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 19132393 19132450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 19253940 19254023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 19255045 19255165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 19257433 19257537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 19260949 19261021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 19265750 19265850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 19269770 19269885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 19274516 19274983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 19283280 19283745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 19287473 19287556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 19290677 19290796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 19291644 19291697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 19320562 19320624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 19322310 19322390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 19322518 19322667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 19336515 19336616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 19343323 19343434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 19345842 19345888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 19348399 19348519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 19353884 19354002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 19358228 19358437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 19359412 19359546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 19361582 19361706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 19365964 19366109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 19369693 19369787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3525 nt):
ATGGCGGCGGATCTGAACCTGGAGTGGATCTCCCTGCCCCGGTCCTGGACTTACGGGATCACCAGGGGCG
GCCGAGTCTTCTTCATCAACGAGGAGGCCAAGAGCACCACCTGGCTGCACCCCGTCACCGGCGAGGCGGT
GGTCACCGGACACCGGCGGCAGAGCACAGATTTGCCTACTGGCTGGGAAGAAGCATATACTTTTGAAGGT
GCAAGATACTATATAAACCATAATGAAAGGAAAGTGACCTGCAAACATCCAGTCACAGGACAACCATCAC
AGGACAATTGTATTTTTGTAGTGAATGAACAGACTGTTGCAACCATGACATCTGAAGAAAAGAAGGAACG
GCCAATAAGTATGATAAATGAAGCTTCTAACTATAACGTGACTTCAGATTATGCAGTGCATCCAATGAGC
CCTGTAGGCAGAACTTCACGAGCTTCAAAAAAAGTTCATAATTTTGGAAAGAGGTCAAATTCAATTAAAA
GGAATCCTAATGCACCGGTTGTCAGACGAGGTTGGCTTTATAAACAGGACAGTACTGGCATGAAATTGTG
GAAGAAACGCTGGTTTGTGCTTTCTGACCTTTGCCTCTTTTATTATAGAGATGAGAAAGAAGAGGGTATC
CTGGGAAGCATACTGTTACCTAGTTTTCAGATAGCTTTGCTTACCTCTGAAGATCACATTAATCGCAAAT
ATGCTTTTAAGGCAGCCCATCCAAACATGCGGACCTATTATTTCTGCACTGATACAGGAAAGGAAATGGA
GTTGTGGATGAAAGCCATGTTAGATGCTGCCCTAGTACAGACAGAACCTGTGAAAAGAGTGGACAAGATT
ACATCTGAAAATGCACCAACTAAAGAAACCAATAACATTCCCAACCATAGAGTGCTAATTAAACCAGAGA
TCCAAAACAATCAAAAAAACAAGGAAATGAGCAAAATTGAAGAAAAAAAGGCATTAGAAGCTGAAAAATA
TGGATTTCAGAAGGATGGTCAAGATAGACCCTTAACAAAAATTAATAGTGTAAAGCTGAATTCTCTGCCA
TCTGAATATGAGAGTGGGTCAGCATGCCCTGCTCAGACTGTGCACTACAGACCAATCAACTTGAGCAGTT
CAGAGAACAAAATAGTCAATGTTAGCCTGGCAGATCTTAGAGGTGGAAATCGCCCCAATACAGGGCCCTT
ATACACAGAGGCCGATCGAGTCATACAGAGAACAAATTCAATGCAGCAGTTGGAACAGTGGATTAAAATC
CAGAAGGGGAGGGGTCATGAAGAAGAAACCAGGGGAGTAATTTCTTACCAAACATTACCAAGAAATATGC
CAAGTCACAGAGCCCAGATTATGGCCCGCTACCCTGAAGGTTATAGAACACTCCCAAGAAACAGCAAGAC
AAGGCCTGAAAGTATCTGCAGTGTAACCCCTTCCACTCATGACAAGACATTAGGACCCGGAGCGGAGGAG
AAACGGAGGTCCATGAGAGATGACACAATGTGGCAGCTCTACGAATGGCAGCAGCGTCAGTTTTATAACA
AACAGAGCACCCTCCCTCGACACAGTACTTTGAGTAGTCCCAAAACCATGGTAAATATTTCTGACCAGAC
AATGCACTCTATTCCCACATCACCTTCCCACGGGTCAATAGCTGCTTATCAGGGATACTCCCCTCAACGA
ACTTACAGATCGGAAGTGTCTTCACCAATTCAGAGAGGAGATGTGACAATAGACCGCAGACACAGGGCCC
ATCACCCTAAGCATGTCTATGTGCCTGACAGAAGGTCAGTGCCAGCTGGCCTGACTTTACAGTCTGTTAG
TCCCCAGAGCCTCCAAGGGAAAACGCCAGAGGAGCTTACGCTGCTGCTAATAAAGCTGAGACGGCAGCAA
GCCGAACTGAGTAGTATCCGGGAGCATACGTTAGCACAGCTCATGCAGCTAAAGCTTGAGGCCCACAGCC
CAAAGAATGAAATTCTTTCACATCATCTCCAAAGGAACACCATATATTTGGATCATCAGCTGTCACAAGA
TGAAGGTAGAGGCACATTATACAAATACAGACCTGAAGAAGTAGATATTGATGCCAAGTTAAGCCGATTA
TGTGAACAAGATAAAGTGGTGCATGCTCTGGAAGAGAAACTTCAGCAACTCCACAAGGAGAAATACACGC
TTGAGCAAGCTTTGCTATCAGCCAGCCAAGAGATAGAAATGCATGCAGATAACCCAGCAGCCATTCAGAC
AGTGGTGTTACAAAGGGATGATTTACAAAATGGACTGCTTAGTACGTGTCGAGAACTTTCTCGAGCCACT
GCCGAATTGGAACGAGCATGGAGAGAATATGATAAGTTAGAATACGATGTAACTGTTACCAGGAACCAGA
TGCAAGAGCAGCTGGATCACCTTGGTGAAGTTCAGACGGAATCAGCAGGAATTCAGCGTGCACAGATTCA
GAAAGAACTTTGGCGAATTCAGGATGTCATGGAAGGGCTGAGTAAACATAAGCAGCAAAGAGGTACTACA
GAAATAGGTATGATAGGATCAAAGCCTTTCTCAACAGTTAAGTACAAAAATGAGGGTCCAGATTATAGAC
TCTACAAGAGTGAACCAGAGTTAACAACAGTGGCAGAAGTTGATGAATCTAATGGAGAAGAAAAATCAGA
ACCTGTTTCAGAGATAGAAACTTCAGTTGTTAAAGGTTCCCACTTTCCTGTTGGAGTAGTCCCTCCAAGA
GCAAAATCACCAACACCCGAATCTTCGACAATAGCTTCCTATGTAACCTTGAGGAAAACTAAGAAGATGA
TGGATCTAAGAACGGAAAGACCAAGAAGTGCAGTGGAACAGCTCTGTTTGGCTGAAAGTACTCGACCAAG
GATGACTGTGGAAGAGCAAATGGAAAGAATAAGAAGACATCAACAAGCGTGCCTGAGGGAGAAGAAAAAA
GGGTTAAATGTTATCGGTGCTTCAGACCAGTCACCCTTACAAAGCCCTTCAAATTTAAGGGATAATCCAT
TTAGGACTACTCAGACTCGAAGGAGGGATGATAAGGAACTGGACACTGCCATTAGAGAAAATGATGTAAA
GCCAGACCATGAAACTCCTGCAACAGAAATTGTTCAACTAAAAGAAACCGAACCCCAAAATGTGGACTTC
AGCAAAGAGTTAAAAAAAACTGAAAACATTTCATATGAAATGCTTTTTGAACCTGAGCCAAATGGAGTAA
ATTCTGTGGAAATGATGGATAAAGAAAGAAACAAAGACAAAATGCCTGAGGATGTTACATTCAGCCCTCA
AGATGAAACACAGACCGCAAATCATAAACCAGAAGAGCATCCTGAAGAAAATACAAAGAACAGTGTTGAC
GAACAGGAAGAAACTGTTATTTCTTACGAATCAACTCCTGAGGTTTCTAGAGGAAATCAAACAATGGCAG
TGAAAAGTCTGTCCCCATCTCCTGAGTCCTCGGCATCGCCAGTTCCATCCACTCAGCCGCAGCTCACAGA
AGGATCACATTTCATGTGTGTGTAG

Translation (1174 aa):
MAADLNLEWISLPRSWTYGITRGGRVFFINEEAKSTTWLHPVTGEAVVTGHRRQSTDLPTGWEEAYTFEG
ARYYINHNERKVTCKHPVTGQPSQDNCIFVVNEQTVATMTSEEKKERPISMINEASNYNVTSDYAVHPMS
PVGRTSRASKKVHNFGKRSNSIKRNPNAPVVRRGWLYKQDSTGMKLWKKRWFVLSDLCLFYYRDEKEEGI
LGSILLPSFQIALLTSEDHINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLDAALVQTEPVKRVDKI
TSENAPTKETNNIPNHRVLIKPEIQNNQKNKEMSKIEEKKALEAEKYGFQKDGQDRPLTKINSVKLNSLP
SEYESGSACPAQTVHYRPINLSSSENKIVNVSLADLRGGNRPNTGPLYTEADRVIQRTNSMQQLEQWIKI
QKGRGHEEETRGVISYQTLPRNMPSHRAQIMARYPEGYRTLPRNSKTRPESICSVTPSTHDKTLGPGAEE
KRRSMRDDTMWQLYEWQQRQFYNKQSTLPRHSTLSSPKTMVNISDQTMHSIPTSPSHGSIAAYQGYSPQR
TYRSEVSSPIQRGDVTIDRRHRAHHPKHVYVPDRRSVPAGLTLQSVSPQSLQGKTPEELTLLLIKLRRQQ
AELSSIREHTLAQLMQLKLEAHSPKNEILSHHLQRNTIYLDHQLSQDEGRGTLYKYRPEEVDIDAKLSRL
CEQDKVVHALEEKLQQLHKEKYTLEQALLSASQEIEMHADNPAAIQTVVLQRDDLQNGLLSTCRELSRAT
AELERAWREYDKLEYDVTVTRNQMQEQLDHLGEVQTESAGIQRAQIQKELWRIQDVMEGLSKHKQQRGTT
EIGMIGSKPFSTVKYKNEGPDYRLYKSEPELTTVAEVDESNGEEKSEPVSEIETSVVKGSHFPVGVVPPR
AKSPTPESSTIASYVTLRKTKKMMDLRTERPRSAVEQLCLAESTRPRMTVEEQMERIRRHQQACLREKKK
GLNVIGASDQSPLQSPSNLRDNPFRTTQTRRRDDKELDTAIRENDVKPDHETPATEIVQLKETEPQNVDF
SKELKKTENISYEMLFEPEPNGVNSVEMMDKERNKDKMPEDVTFSPQDETQTANHKPEEHPEENTKNSVD
EQEETVISYESTPEVSRGNQTMAVKSLSPSPESSASPVPSTQPQLTEGSHFMCV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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