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Report for CCDS4479.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4479.1 Public Homo sapiens 6 SERPINB6 24 110 108 CCDS HistoryNCBI Gene:5269Re-query CCDS DB by CCDS ID:4479.1Re-query CCDS DB by GeneID:5269See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4479.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380520.6 ENSP00000369891.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000380520.6Link to Ensembl Protein Viewer:ENSP00000369891.1Re-query CCDS DB by Nucleotide ID:ENST00000380520Re-query CCDS DB by Protein ID:ENSP00000369891
Original member Current member EBI ENST00000380524.5 ENSP00000369896.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000380524.5Link to Ensembl Protein Viewer:ENSP00000369896.1Re-query CCDS DB by Nucleotide ID:ENST00000380524Re-query CCDS DB by Protein ID:ENSP00000369896
Original member Current member EBI ENST00000380529.5 ENSP00000369901.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000380529.5Link to Ensembl Protein Viewer:ENSP00000369901.1Re-query CCDS DB by Nucleotide ID:ENST00000380529Re-query CCDS DB by Protein ID:ENSP00000369901
Original member Current member EBI ENST00000380539.7 ENSP00000369912.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000380539.7Link to Ensembl Protein Viewer:ENSP00000369912.2Re-query CCDS DB by Nucleotide ID:ENST00000380539Re-query CCDS DB by Protein ID:ENSP00000369912
Original member Current member EBI ENST00000380546.7 ENSP00000369919.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000380546.7Link to Ensembl Protein Viewer:ENSP00000369919.3Re-query CCDS DB by Nucleotide ID:ENST00000380546Re-query CCDS DB by Protein ID:ENSP00000369919
Original member Current member EBI ENST00000643098.1 ENSP00000493936.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000643098.1Link to Ensembl Protein Viewer:ENSP00000493936.1Re-query CCDS DB by Nucleotide ID:ENST00000643098Re-query CCDS DB by Protein ID:ENSP00000493936
Original member Current member EBI ENST00000644388.1 ENSP00000494650.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000644388.1Link to Ensembl Protein Viewer:ENSP00000494650.1Re-query CCDS DB by Nucleotide ID:ENST00000644388Re-query CCDS DB by Protein ID:ENSP00000494650
Original member Current member EBI ENST00000644178.1 ENSP00000496073.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000644178.1Link to Ensembl Protein Viewer:ENSP00000496073.1Re-query CCDS DB by Nucleotide ID:ENST00000644178Re-query CCDS DB by Protein ID:ENSP00000496073
Original member Current member NCBI NM_001271824.2 NP_001258753.1 Accepted alive Link to Nucleotide Sequence:NM_001271824.2Link to Protein Sequence:NP_001258753.1Re-query CCDS DB by Nucleotide ID:NM_001271824Re-query CCDS DB by Protein ID:NP_001258753Link to BLAST:NP_001258753.1
Original member Current member NCBI NM_001271825.2 NP_001258754.1 Accepted alive Link to Nucleotide Sequence:NM_001271825.2Link to Protein Sequence:NP_001258754.1Re-query CCDS DB by Nucleotide ID:NM_001271825Re-query CCDS DB by Protein ID:NP_001258754Link to BLAST:NP_001258754.1
Original member Current member NCBI NM_001297699.2 NP_001284628.1 Accepted alive Link to Nucleotide Sequence:NM_001297699.2Link to Protein Sequence:NP_001284628.1Re-query CCDS DB by Nucleotide ID:NM_001297699Re-query CCDS DB by Protein ID:NP_001284628Link to BLAST:NP_001284628.1
Original member Current member NCBI NM_001297700.2 NP_001284629.1 Accepted alive Link to Nucleotide Sequence:NM_001297700.2Link to Protein Sequence:NP_001284629.1Re-query CCDS DB by Nucleotide ID:NM_001297700Re-query CCDS DB by Protein ID:NP_001284629Link to BLAST:NP_001284629.1
Original member Current member NCBI NM_001374516.1 NP_001361445.1 Accepted alive Link to Nucleotide Sequence:NM_001374516.1Link to Protein Sequence:NP_001361445.1Re-query CCDS DB by Nucleotide ID:NM_001374516Re-query CCDS DB by Protein ID:NP_001361445Link to BLAST:NP_001361445.1
Original member Current member NCBI NM_004568.6 NP_004559.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004568.6Link to Protein Sequence:NP_004559.4Re-query CCDS DB by Nucleotide ID:NM_004568Re-query CCDS DB by Protein ID:NP_004559Link to BLAST:NP_004559.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258753.1 376 P35237 376 100% 0 0
NP_001258754.1 376 P35237 376 100% 0 0
NP_001284628.1 376 P35237 376 100% 0 0
NP_001284629.1 376 P35237 376 100% 0 0
NP_001361445.1 376 P35237 376 100% 0 0
NP_004559.4 376 P35237 376 100% 0 0

Chromosomal Locations for CCDS 4479.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 2948298 2948699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 2948914 2949069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 2953044 2953186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 2954592 2954709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 2955524 2955670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 2959168 2959332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1131 nt):
ATGGATGTTCTCGCAGAAGCAAATGGCACCTTTGCCTTAAACCTTTTGAAAACGCTGGGTAAAGACAACT
CGAAGAATGTGTTTTTCTCACCCATGAGCATGTCCTGTGCCCTGGCCATGGTCTACATGGGGGCAAAGGG
AAACACCGCTGCACAGATGGCCCAGATACTTTCTTTCAATAAAAGTGGCGGTGGTGGAGACATCCACCAG
GGCTTCCAGTCTCTTCTCACCGAAGTGAACAAGACTGGCACGCAGTACTTGCTTAGGATGGCCAACAGGC
TCTTTGGGGAAAAGTCTTGTGATTTCCTCTCATCTTTTAGAGATTCCTGCCAAAAATTCTACCAAGCAGA
GATGGAGGAGCTTGACTTTATCAGCGCCGTAGAGAAGTCCAGAAAACACATAAACACCTGGGTAGCTGAA
AAGACAGAAGGTAAAATTGCGGAGTTGCTCTCTCCGGGCTCAGTGGATCCATTGACAAGGCTGGTTCTGG
TGAATGCTGTCTATTTCAGAGGAAACTGGGATGAACAGTTTGACAAGGAGAACACCGAGGAGAGACTGTT
TAAAGTCAGCAAGAATGAGGAGAAACCTGTGCAAATGATGTTTAAGCAATCTACTTTTAAGAAGACCTAT
ATAGGAGAAATATTTACCCAAATCTTGGTGCTTCCATATGTTGGCAAGGAACTGAATATGATCATCATGC
TTCCGGACGAGACCACTGACTTGAGAACGGTGGAGAAAGAACTCACTTACGAGAAGTTCGTAGAATGGAC
GAGGCTGGACATGATGGATGAAGAGGAGGTGGAAGTGTCCCTCCCGCGGTTTAAACTAGAGGAAAGCTAC
GACATGGAGAGTGTCCTGCGCAACCTGGGCATGACTGATGCCTTCGAGCTGGGCAAGGCAGACTTCTCTG
GAATGTCCCAGACAGACCTGTCTCTGTCCAAGGTCGTGCACAAGTCTTTTGTGGAGGTCAATGAGGAAGG
CACGGAGGCTGCAGCCGCCACAGCTGCCATCATGATGATGCGGTGTGCCAGATTCGTCCCCCGCTTCTGC
GCCGACCACCCCTTCCTTTTCTTCATCCAGCACAGCAAGACCAACGGGATTCTCTTCTGCGGCCGCTTTT
CCTCTCCGTGA

Translation (376 aa):
MDVLAEANGTFALNLLKTLGKDNSKNVFFSPMSMSCALAMVYMGAKGNTAAQMAQILSFNKSGGGGDIHQ
GFQSLLTEVNKTGTQYLLRMANRLFGEKSCDFLSSFRDSCQKFYQAEMEELDFISAVEKSRKHINTWVAE
KTEGKIAELLSPGSVDPLTRLVLVNAVYFRGNWDEQFDKENTEERLFKVSKNEEKPVQMMFKQSTFKKTY
IGEIFTQILVLPYVGKELNMIIMLPDETTDLRTVEKELTYEKFVEWTRLDMMDEEEVEVSLPRFKLEESY
DMESVLRNLGMTDAFELGKADFSGMSQTDLSLSKVVHKSFVEVNEEGTEAAAATAAIMMMRCARFVPRFC
ADHPFLFFIQHSKTNGILFCGRFSSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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