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Report for CCDS4472.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4472.1 Public Homo sapiens 6 FOXF2 24 110 108 CCDS HistoryNCBI Gene:2295Re-query CCDS DB by CCDS ID:4472.1Re-query CCDS DB by GeneID:2295See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4472.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000645481.2 ENSP00000496415.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000645481.2Link to Ensembl Protein Viewer:ENSP00000496415.1Re-query CCDS DB by Nucleotide ID:ENST00000645481Re-query CCDS DB by Protein ID:ENSP00000496415
Original member Current member NCBI NM_001452.2 NP_001443.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001452.2Link to Protein Sequence:NP_001443.1Re-query CCDS DB by Nucleotide ID:NM_001452Re-query CCDS DB by Protein ID:NP_001443Link to BLAST:NP_001443.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001443.1 444 Q12947 444 100% 0 0

Chromosomal Locations for CCDS 4472.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 1389948 1391118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 1394696 1394859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1335 nt):
ATGACCACCGAGGGCGGGCCGCCGCCGGCCCCGCTCCGCCGCGCGTGCAGCCCGGTCCCCGGCGCGCTCC
AGGCCGCCCTGATGAGCCCGCCGCCCGCCGCCGCCGCCGCCGCCGCCGCCGCCCCGGAGACCACCTCCTC
CTCCTCGTCGTCGTCCTCCGCCTCCTGCGCCTCGTCCTCGTCCTCCTCCAATTCGGCCAGCGCCCCCTCG
GCTGCCTGCAAGAGCGCGGGCGGCGGCGGCGCGGGCGCCGGGAGCGGGGGCGCCAAGAAGGCGAGCTCGG
GGCTGCGGCGGCCCGAGAAGCCGCCCTACTCGTACATCGCGCTCATCGTCATGGCCATCCAGAGCTCGCC
CAGCAAGCGCCTGACGCTCAGCGAGATCTACCAGTTCCTGCAGGCGCGCTTCCCCTTCTTCCGCGGCGCC
TACCAGGGCTGGAAGAACTCGGTGCGCCACAATCTCTCGCTCAACGAGTGCTTCATCAAGCTGCCTAAGG
GCCTCGGGCGGCCCGGCAAGGGCCACTACTGGACCATCGACCCGGCCAGCGAGTTCATGTTCGAGGAGGG
CTCGTTCCGCCGCCGGCCGCGCGGCTTCAGGCGGAAGTGCCAGGCGCTCAAGCCCATGTACCACCGCGTG
GTGAGCGGCTTGGGCTTCGGGGCGTCGCTGCTGCCCCAGGGCTTCGACTTCCAGGCGCCCCCGTCGGCGC
CGCTCGGCTGCCACAGCCAGGGCGGCTACGGCGGCCTCGACATGATGCCCGCGGGCTACGACGCCGGCGC
GGGCGCCCCCAGCCACGCGCACCCTCACCACCACCACCACCACCACGTCCCGCACATGTCGCCCAACCCG
GGTTCCACCTACATGGCCAGCTGCCCGGTGCCCGCGGGACCCGGGGGCGTCGGTGCGGCCGGGGGCGGCG
GCGGCGGCGACTACGGGCCGGACAGCAGCAGCAGCCCGGTACCCTCGTCCCCGGCCATGGCGAGCGCCAT
CGAATGCCACTCGCCCTACACGAGCCCTGCGGCGCACTGGAGCTCGCCTGGCGCCTCGCCTTACCTCAAG
CAGCCGCCTGCCCTGACGCCCAGCAGCAACCCCGCCGCCTCGGCAGGCCTGCACTCCAGCATGTCCTCCT
ACTCGCTGGAGCAGAGCTACTTGCACCAGAACGCTCGCGAGGACCTCTCAGTGGGACTGCCCCGTTACCA
GCATCACTCTACTCCAGTGTGTGACAGAAAAGATTTCGTCCTCAACTTCAATGGGATTTCTTCTTTCCAT
CCCTCAGCTAGCGGGTCGTATTATCACCATCACCACCAGAGCGTCTGTCAGGATATTAAGCCCTGCGTCA
TGTGA

Translation (444 aa):
MTTEGGPPPAPLRRACSPVPGALQAALMSPPPAAAAAAAAAPETTSSSSSSSSASCASSSSSSNSASAPS
AACKSAGGGGAGAGSGGAKKASSGLRRPEKPPYSYIALIVMAIQSSPSKRLTLSEIYQFLQARFPFFRGA
YQGWKNSVRHNLSLNECFIKLPKGLGRPGKGHYWTIDPASEFMFEEGSFRRRPRGFRRKCQALKPMYHRV
VSGLGFGASLLPQGFDFQAPPSAPLGCHSQGGYGGLDMMPAGYDAGAGAPSHAHPHHHHHHHVPHMSPNP
GSTYMASCPVPAGPGGVGAAGGGGGGDYGPDSSSSPVPSSPAMASAIECHSPYTSPAAHWSSPGASPYLK
QPPALTPSSNPAASAGLHSSMSSYSLEQSYLHQNAREDLSVGLPRYQHHSTPVCDRKDFVLNFNGISSFH
PSASGSYYHHHHQSVCQDIKPCVM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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