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Report for CCDS44575.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44575.1 Public Homo sapiens 11 SLC35C1 24 110 108 CCDS HistoryNCBI Gene:55343Re-query CCDS DB by CCDS ID:44575.1Re-query CCDS DB by GeneID:55343See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44575.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000442528.2 ENSP00000412408.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000442528.2Link to Ensembl Protein Viewer:ENSP00000412408.2Re-query CCDS DB by Nucleotide ID:ENST00000442528Re-query CCDS DB by Protein ID:ENSP00000412408
Original member Current member EBI ENST00000526817.2 ENSP00000432145.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000526817.2Link to Ensembl Protein Viewer:ENSP00000432145.2Re-query CCDS DB by Nucleotide ID:ENST00000526817Re-query CCDS DB by Protein ID:ENSP00000432145
Original member Current member NCBI NM_001145265.2 NP_001138737.1 Accepted alive Link to Nucleotide Sequence:NM_001145265.2Link to Protein Sequence:NP_001138737.1Re-query CCDS DB by Nucleotide ID:NM_001145265Re-query CCDS DB by Protein ID:NP_001138737Link to BLAST:NP_001138737.1
Original member NCBI NM_001145266.1 NP_001138738.1 Updated not alive Link to Nucleotide Sequence:NM_001145266.1Link to Protein Sequence:NP_001138738.1Re-query CCDS DB by Nucleotide ID:NM_001145266Re-query CCDS DB by Protein ID:NP_001138738
Current member NCBI NM_001145266.2 NP_001138738.1 Accepted alive Link to Nucleotide Sequence:NM_001145266.2Link to Protein Sequence:NP_001138738.1Re-query CCDS DB by Nucleotide ID:NM_001145266Re-query CCDS DB by Protein ID:NP_001138738Link to BLAST:NP_001138738.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138737.1 351 Q96A29-2 351 100% 0 0
NP_001138738.1 351 Q96A29-2 351 100% 0 0

Chromosomal Locations for CCDS 44575.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 45805841 45806336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 45810776 45811335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1056 nt):
ATGGCGCTGACCGGGGCCTCAGACCCCTCTGCAGAGGCAGAGGCCAACGGGGAGAAGCCCTTTCTGCTGC
GGGCATTGCAGATCGCGCTGGTGGTCTCCCTCTACTGGGTCACCTCCATCTCCATGGTGTTCCTTAATAA
GTACCTGCTGGACAGCCCCTCCCTGCGGCTGGACACCCCCATCTTCGTCACCTTCTACCAGTGCCTGGTG
ACCACGCTGCTGTGCAAAGGCCTCAGCGCTCTGGCCGCCTGCTGCCCTGGTGCCGTGGACTTCCCCAGCT
TGCGCCTGGACCTCAGGGTGGCCCGCAGCGTCCTGCCCCTGTCGGTGGTCTTCATCGGCATGATCACCTT
CAATAACCTCTGCCTCAAGTACGTCGGTGTGGCCTTCTACAATGTGGGCCGCTCACTCACCACCGTCTTC
AACGTGCTGCTCTCCTACCTGCTGCTCAAGCAGACCACCTCCTTCTATGCCCTGCTCACCTGCGGTATCA
TCATCGGGGGCTTCTGGCTTGGTGTGGACCAGGAGGGGGCAGAAGGCACCCTGTCGTGGCTGGGCACCGT
CTTCGGCGTGCTGGCTAGCCTCTGTGTCTCGCTCAACGCCATCTACACCACGAAGGTGCTCCCGGCGGTG
GACGGCAGCATCTGGCGCCTGACTTTCTACAACAACGTCAACGCCTGCATCCTCTTCCTGCCCCTGCTCC
TGCTGCTCGGGGAGCTTCAGGCCCTGCGTGACTTTGCCCAGCTGGGCAGTGCCCACTTCTGGGGGATGAT
GACGCTGGGCGGCCTGTTTGGCTTTGCCATCGGCTACGTGACAGGACTGCAGATCAAGTTCACCAGTCCG
CTGACCCACAATGTGTCGGGCACGGCCAAGGCCTGTGCCCAGACAGTGCTGGCCGTGCTCTACTACGAGG
AGACCAAGAGCTTCCTCTGGTGGACGAGCAACATGATGGTGCTGGGCGGCTCCTCCGCCTACACCTGGGT
CAGGGGCTGGGAGATGAAGAAGACTCCGGAGGAGCCCAGCCCCAAAGACAGCGAGAAGAGCGCCATGGGG
GTGTGA

Translation (351 aa):
MALTGASDPSAEAEANGEKPFLLRALQIALVVSLYWVTSISMVFLNKYLLDSPSLRLDTPIFVTFYQCLV
TTLLCKGLSALAACCPGAVDFPSLRLDLRVARSVLPLSVVFIGMITFNNLCLKYVGVAFYNVGRSLTTVF
NVLLSYLLLKQTTSFYALLTCGIIIGGFWLGVDQEGAEGTLSWLGTVFGVLASLCVSLNAIYTTKVLPAV
DGSIWRLTFYNNVNACILFLPLLLLLGELQALRDFAQLGSAHFWGMMTLGGLFGFAIGYVTGLQIKFTSP
LTHNVSGTAKACAQTVLAVLYYEETKSFLWWTSNMMVLGGSSAYTWVRGWEMKKTPEEPSPKDSEKSAMG
V


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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