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Report for CCDS44528.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44528.1 Public Homo sapiens 11 OR52N4 24 110 108 CCDS HistoryNCBI Gene:390072Re-query CCDS DB by CCDS ID:44528.1Re-query CCDS DB by GeneID:390072See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)


Attributes
Polymorphic pseudogene

Sequence IDs included in CCDS 44528.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000641350.2 ENSP00000493338.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000641350.2Link to Ensembl Protein Viewer:ENSP00000493338.1Re-query CCDS DB by Nucleotide ID:ENST00000641350Re-query CCDS DB by Protein ID:ENSP00000493338
Original member Current member NCBI NM_001005175.5 NP_001005175.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001005175.5Link to Protein Sequence:NP_001005175.3Re-query CCDS DB by Nucleotide ID:NM_001005175Re-query CCDS DB by Protein ID:NP_001005175Link to BLAST:NP_001005175.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001005175.3 321 Q8NGI2 321 100% 0 0

Chromosomal Locations for CCDS 44528.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 5754741 5755706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (966 nt):
ATGCTAACACTGAATAAAACAGACCTAATACCAGCTTCATTTATTCTGAATGGAGTCCCAGGACTGGAAG
ACACACAACTCTGGATTTCCTTCCCATTCTGCTCTATGTATGTTGTGGCTATGGTAGGGAATTGTGGACT
CCTCTACCTCATTCACTATGAGGATGCCCTGCACAAACCCATGTACTACTTCTTGGCCATGCTTTCCTTT
ACTGACCTTGTTATGTGCTCTAGTACAATCCCTAAAGCCCTCTGCATCTTCTGGTTTCATCTCAAGGACA
TTGGATTTGATGAATGCCTTGTCCAGATGTTCTTCACCCACACCTTCACAGGGATGGAGTCTGGGGTGCT
TATGCTTATGGCCCTGGATCGCTATGTGGCCATCTGCTACCCCTTACGCTATTCAACTATCCTCACCAAT
CCTGTAATTGCAAAGGTTGGGACTGCCACCTTCCTGAGAGGGGTATTACTCATTATTCCCTTTACTTTCC
TCACCAAGCTCCTGCCCTACTGCAGAGGCAATATACTTCCCCATACCTACTGTGACCACATGTCTGTAGC
CAAATTGTCCTGTGGTAATGTCAAGGTCAATGCCATCTATGGTCTGATGGTTGCCCTCCTGATTTGGGGC
TTTGACATACTGTGTATCACCAACTCCTATACCATGATTCTCCGGGCAGTGGTCAGCCTCTCCTCAGCAG
ATGCTCGGCAGAAGGCCTTTAATACCTGCACTGCCCACATTTGTGCCATTGTTTTCTCCTATACTCCAGC
TTTCTTCTCCTTCTTTTCCCACCGCTTTGGGGAACACATAATCCCCCCTTCTTGCCACATCATTGTAGCC
AATATTTATCTGCTCCTACCACCCACTATGAACCCTATTGTCTATGGGGTGAAAACCAAACAGATACGAG
ACTGTGTCATAAGGATCCTTTCAGGTTCTAAGGATACCAAATCCTACAGCATGTGA

Translation (321 aa):
MLTLNKTDLIPASFILNGVPGLEDTQLWISFPFCSMYVVAMVGNCGLLYLIHYEDALHKPMYYFLAMLSF
TDLVMCSSTIPKALCIFWFHLKDIGFDECLVQMFFTHTFTGMESGVLMLMALDRYVAICYPLRYSTILTN
PVIAKVGTATFLRGVLLIIPFTFLTKLLPYCRGNILPHTYCDHMSVAKLSCGNVKVNAIYGLMVALLIWG
FDILCITNSYTMILRAVVSLSSADARQKAFNTCTAHICAIVFSYTPAFFSFFSHRFGEHIIPPSCHIIVA
NIYLLLPPTMNPIVYGVKTKQIRDCVIRILSGSKDTKSYSM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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