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Report for CCDS44507.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44507.1 Public Homo sapiens 11 PHRF1 24 110 108 CCDS HistoryNCBI Gene:57661Re-query CCDS DB by CCDS ID:44507.1Re-query CCDS DB by GeneID:57661See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44507.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000416188.3 ENSP00000410626.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000416188.3Link to Ensembl Protein Viewer:ENSP00000410626.2Re-query CCDS DB by Nucleotide ID:ENST00000416188Re-query CCDS DB by Protein ID:ENSP00000410626
Original member Current member NCBI NM_020901.4 NP_065952.2 Accepted alive Link to Nucleotide Sequence:NM_020901.4Link to Protein Sequence:NP_065952.2Re-query CCDS DB by Nucleotide ID:NM_020901Re-query CCDS DB by Protein ID:NP_065952Link to BLAST:NP_065952.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065952.2 1648 Q9P1Y6-3 1648 100% 0 0

Chromosomal Locations for CCDS 44507.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 581513 581606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 581962 582081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 587259 587464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 591384 591467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 592559 592674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 596923 597020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 597395 597570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 598373 598502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 601574 601701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 605119 605300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 605608 605724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 606442 606596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 607066 609720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 610196 610347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 610501 610761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 610954 611082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 611634 611777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4947 nt):
ATGGATGACGACAGCCTGGATGAGCTTGTGGCCCGGAGCCCAGGGCCGGATGGACACCCACAGGTCGGCC
CTGCGGACCCGGCAGGTGACTTTGAAGAAAGCAGCGTGGGCAGCAGTGGGGACTCTGGGGACGACAGTGA
CAGCGAGCATGGAGATGGCACAGACGGAGAAGACGAGGGGGCGTCTGAGGAGGAAGACCTGGAAGACAGA
TCTGGTTCCGAGGATTCTGAAGACGACGGGGAGACATTGCTGGAGGTAGCGGGTACTCAGGGGAAACTGG
AAGCCGCTGGCTCTTTCAATTCTGATGATGATGCAGAGAGCTGCCCAATCTGTCTCAACGCATTCAGAGA
CCAGGCCGTGGGGACGCCGGAGAACTGTGCCCATTACTTCTGCCTGGACTGCATTGTCGAATGGTCCAAG
AATGCCAATTCCTGTCCAGTTGATCGAACTCTATTTAAGTGCATTTGTATTCGAGCTCAATTTGGTGGTA
AAATCTTAAGAAAGATCCCAGTGGAGAACACCAAAGCGAGCGAGGAGGAGGAGGACCCGACCTTCTGTGA
GGTGTGCGGCAGGAGCGACCGTGAGGACAGGCTTTTGCTCTGCGACGGCTGCGATGCGGGGTACCACATG
GAATGCTTGGACCCCCCTCTCCAGGAGGTGCCGGTGGACGAGTGGTTCTGCCCGGAATGTGCTGCGCCTG
GTGTTGTCCTTGCCGCTGATGCGGGTCCCGTGAGTGAGGAGGAGGTCTCCCTGCTCTTGGCTGATGTGGT
GCCCACCACCAGCAGGCTTCGGCCTCGAGCAGGTAGGACCCGGGCGATAGCCAGGACACGGCAGAGTGAG
AGAGTGAGAGCAACCGTGAACCGGAACCGGATCTCCACGGCCAGGAGGGTCCAGCACACACCAGGGCGCC
TCGGGTCTTCCCTGCTGGATGAAGCCATCGAGGCTGTGGCGACTGGCCTGAGCACTGCCGTGTATCAGCG
CCCCCTGACGCCGCGCACTCCCGCCCGACGGAAGAGGAAGACAAGAAGACGGAAGAAAGTGCCGGGAAGA
AAGAAAACCCCGTCCGGACCATCCGCAAAAAGTAAGAGCTCAGCGACAAGATCTAAGAAACGCCAACATC
GAGTGAAGAAGAGAAGAGGGAAGAAGGTAAAGAGTGAAGCCACCACTCGCTCTCGAATCGCGCGGACGCT
GGGCCTGCGCAGGCCTGTTCACAGCAGCTGCATCCCGTCAGTGTTGAAGCCAGTGGAGCCCTCTTTGGGG
CTGCTGAGAGCGGATATTGGAGCTGCCTCTCTGTCTCTGTTTGGAGATCCTTATGAGCTGGATCCCTTCG
ACAGTGAAGAGCTTTCTGCAAACCCTCTTTCCCCTCTGAGTGCCAAGAGACGGGCTCTGTCCCGGTCAGC
CCTGCAGTCCCACCAGCCCGTGGCCAGGCCCGTCTCCGTGGGGCTTTCCAGGAGGCGCCTCCCTGCCGCG
GTGCCAGAGCCAGACTTGGAGGAGGAGCCAGTGCCTGACCTGCTGGGCAGCATCCTGTCGGGCCAGAGCC
TCCTGATGCTGGGCAGCAGTGATGTCATCATCCACCGCGACGGCTCCCTCAGCGCCAAGAGGGCGGCTCC
AGTTTCTTTTCAGCGAAACTCAGGCAGTCTGTCCAGAGGGGAAGAAGGATTCAAGGGCTGCCTGCAGCCC
CGAGCACTGCCCTCCGGGAGCCCGGCCCAAGGCCCGTCAGGAAACAGGCCACAGAGCACAGGGCTCAGCT
GTCAAGGCAGGTCCCGCACCCCCGCCCGCACCGCGGGGGCGCCTGTGAGGCTGGACTTGCCAGCAGCCCC
TGGGGCGGTTCAGGCTCGGAACTTGTCAAATGGGAGTGTGCCTGGCTTCAGACAGAGCCACAGCCCCTGG
TTCAACGGCACCAACAAGCACACCTTGCCCCTTGCCTCTGCCGCGTCTAAGATCTCAAGCAGAGATTCTA
AGCCCCCATGTCGCAGTGTGGTGCCGGGGCCTCCCCTGAAGCCAGCGCCCAGAAGAACAGACATCTCTGA
GCTACCCAGGATACCAAAGATCAGGAGAGATGACGGTGGTGGCAGACGGGATGCGGCCCCGGCCCACGGG
CAGAGCATTGAGATCCCCAGTGCCTGCATCAGCCGACTGACTGGCAGGGAGGGCACCGGGCAGCCAGGGC
GAGGCACACGGGCAGAGAGCGAGGCCAGCAGCAGGGTGCCCCGGGAGCCCGGGGTGCACACGGGCAGCTC
CCGGCCCCCAGCCCCCAGCTCCCATGGCAGTTTGGCCCCACTGGGACCATCAAGAGGGAAAGGGGTCGGG
TCGACCTTTGAGAGCTTCCGGATCAATATTCCTGGAAACATGGCACATTCCAGCCAGCTCTCCAGCCCTG
GCTTCTGTAACACGTTCCGGCCTGTGGACGATAAGGAGCAGAGGAAGGAGAACCCCTCACCCCTCTTCTC
CATCAAGAAGACGAAGCAGCTGCGGAGCGAGGTCTACGACCCATCCGACCCCACCGGCTCCGACTCCAGC
GCCCCTGGCAGCAGCCCCGAGAGGTCTGGCCCCGGCCTCCTGCCCTCTGAGATCACACGAACCATCTCCA
TCAACAGCCCGAAGGCCCAGACGGTGCAGGCTGTGCGCTGCGTCACCTCCTACACGGTGGAGAGCATCTT
TGGTACAGAGCCCGAACCCCCTCTCGGACCGTCCTCCGCCATGTCCAAGCTCCGGGGTGCAGTGGCTGCC
GAGGGGGCCTCTGACACGGAGCGAGAGGAGCCCACAGAGAGCCAGGGCCTGGCTGCCCGGCTGCGGAGGC
CATCCCCCCCAGAGCCCTGGGATGAGGAGGATGGGGCGTCTTGCAGCACCTTCTTTGGCTCTGAGGAGCG
GACGGTGACCTGTGTGACTGTCGTGGAGCCGGAAGCCCCACCCAGCCCGGACGTGCTGCAGGCTGCCACC
CACAGAGTCGTGGAGCTCAGGCCCCCTTCCCGGTCCCGCTCCACATCCAGCTCCCGCAGCAGGAAGAAGG
CCAAGAGGAAGAGGGTGTCCAGGGAGCACGGACGGACGCGCTCTGGGACGCGCTCTGAATCCAGGGACAG
GAGCTCGAGGTCAGCGTCACCATCAGTGGGTGAGGAGCGCCCCAGGAGGCAGCGGTCCAAGGCCAAGAGC
CGGCGGTCCTCCAGTGACCGCTCCAGCAGCCGAGAGCGAGCTAAGAGGAAGAAAGCCAAGGACAAGAGCA
GGGAGCACAGGCGGGGCCCCTGGGGCCACAGCCGGAGGACGTCCCGGTCGCGGTCGGGGAGCCCTGGCAG
CTCTTCCTATGAGCACTATGAGAGTAGGAAGAAGAAGAAAAGGAGATCAGCGTCCAGACCTCGGGGAAGG
GAGTGCTCCCCCACCAGCAGCCTGGAGAGGCTCTGCAGGCACAAGCATCAGCGGGAACGCAGCCACGAGC
GGCCAGACAGGAAGGAGAGTGTGGCGTGGCCCCGAGACCGGAGGAAGCGGAGGTCCCGGTCCCCAAGCTC
GGAGCACAGGGCACGGGAGCACAGGCGGCCTCGGTCCCGTGAGAAGTGGCCGCAGACCCGGTCCCATTCC
CCAGAGAGGAAGGGGGCTGTGAGGGAGGCTTCCCCAGCGCCCCTTGCACAGGGGGAGCCAGGGCGGGAAG
ACCTCCCCACCAGGTTGCCAGCCTTGGGGGAAGCACATGTCTCGCCGGAGGTGGCTACGGCCGACAAGGC
CCCCCTGCAGGCTCCCCCTGTCCTGGAGGTGGCAGCTGAGTGTGAGCCGGACGACCTGGACCTGGATTAT
GGCGACTCCGTGGAGGCCGGACACGTCTTTGATGATTTCTCAAGCGACGCCGTTTTCATCCAGCTCGATG
ACATGAGCTCGCCACCTTCTCCCGAAAGCACAGACTCTTCCCCGGAGCGAGACTTCCCACTGAAGCCTGC
GTTGCCCCCAGCCAGCCTGGCCGTGGCCGCCATCCAGAGGGAGGTGTCATTGATGCACGATGAAGACCCT
TCGCAGCCCCCACCCCTGCCAGAGGGCACCCAGGAGCCACATTTGCTCAGGCCGGACGCGGCTGAGAAGG
CTGAGGCACCCAGTTCCCCGGATGTGGCGCCTGCGGGGAAGGAAGACAGCCCCTCTGCGAGTGGGAGGGT
ACAGGAGGCAGCCCGGCCTGAGGAGGTGGTTTCGCAGACCCCCCTGCTGCGGTCCAGAGCCCTGGTGAAG
CGGGTCACCTGGAACCTGCAGGAGTCGGAGAGCAGCGCCCCCGCCGAGGACAGAGCCCCCCGGGCACCAC
TTCACAGGCCACAGAAGCCCCGAGAAGGAGCCTGGGACATGGAGGATGTGGCCCCCACAGGGGTCAGGCA
GGTGTTCTCCGAGCTGCCCTTTCCCAGTCACGTGCTTCCGGAACCCGGGTTCCCAGACACAGACCCCTCT
CAGGTTTACAGCCCCGGCCTGCCGCCTGCCCCGGCCCAGCCCTCAAGCATCCCACCCTGCGCACTGGTCA
GCCAGCCCACGGTCCAGTTCATCCTTCAGGGGAGCCTGCCGCTAGTGGGCTGTGGGGCAGCACAGACCCT
GGCCCCAGTGCCCGCTGCCCTGACCCCAGCCTCAGAGCCAGCCAGTCAAGCCACTGCAGCCAGCAACTCG
GAGGAGAAGACCCCGGCCCCCAGGCTAGCTGCGGAGAAAACCAAGAAGGAGGAGTACATGAAGAAGCTGC
ACATGCAGGAGCGTGCTGTGGAGGAGGTGAAGCTGGCCATCAAGCCCTTCTACCAGAAGAGGGAGGTGAC
CAAGGAGGAGTACAAGGACATCCTGCGCAAGGCCGTGCAGAAGATCTGCCACAGCAAGAGTGGAGAGATC
AACCCCGTGAAGGTGGCCAACCTGGTGAAGGCGTACGTGGACAAGTACAGGCACATGCGCAGGCACAAGA
AACCAGAGGCCGGGGAGGAGCCGCCCACGCAGGGGGCCGAGGGCTGA

Translation (1648 aa):
MDDDSLDELVARSPGPDGHPQVGPADPAGDFEESSVGSSGDSGDDSDSEHGDGTDGEDEGASEEEDLEDR
SGSEDSEDDGETLLEVAGTQGKLEAAGSFNSDDDAESCPICLNAFRDQAVGTPENCAHYFCLDCIVEWSK
NANSCPVDRTLFKCICIRAQFGGKILRKIPVENTKASEEEEDPTFCEVCGRSDREDRLLLCDGCDAGYHM
ECLDPPLQEVPVDEWFCPECAAPGVVLAADAGPVSEEEVSLLLADVVPTTSRLRPRAGRTRAIARTRQSE
RVRATVNRNRISTARRVQHTPGRLGSSLLDEAIEAVATGLSTAVYQRPLTPRTPARRKRKTRRRKKVPGR
KKTPSGPSAKSKSSATRSKKRQHRVKKRRGKKVKSEATTRSRIARTLGLRRPVHSSCIPSVLKPVEPSLG
LLRADIGAASLSLFGDPYELDPFDSEELSANPLSPLSAKRRALSRSALQSHQPVARPVSVGLSRRRLPAA
VPEPDLEEEPVPDLLGSILSGQSLLMLGSSDVIIHRDGSLSAKRAAPVSFQRNSGSLSRGEEGFKGCLQP
RALPSGSPAQGPSGNRPQSTGLSCQGRSRTPARTAGAPVRLDLPAAPGAVQARNLSNGSVPGFRQSHSPW
FNGTNKHTLPLASAASKISSRDSKPPCRSVVPGPPLKPAPRRTDISELPRIPKIRRDDGGGRRDAAPAHG
QSIEIPSACISRLTGREGTGQPGRGTRAESEASSRVPREPGVHTGSSRPPAPSSHGSLAPLGPSRGKGVG
STFESFRINIPGNMAHSSQLSSPGFCNTFRPVDDKEQRKENPSPLFSIKKTKQLRSEVYDPSDPTGSDSS
APGSSPERSGPGLLPSEITRTISINSPKAQTVQAVRCVTSYTVESIFGTEPEPPLGPSSAMSKLRGAVAA
EGASDTEREEPTESQGLAARLRRPSPPEPWDEEDGASCSTFFGSEERTVTCVTVVEPEAPPSPDVLQAAT
HRVVELRPPSRSRSTSSSRSRKKAKRKRVSREHGRTRSGTRSESRDRSSRSASPSVGEERPRRQRSKAKS
RRSSSDRSSSRERAKRKKAKDKSREHRRGPWGHSRRTSRSRSGSPGSSSYEHYESRKKKKRRSASRPRGR
ECSPTSSLERLCRHKHQRERSHERPDRKESVAWPRDRRKRRSRSPSSEHRAREHRRPRSREKWPQTRSHS
PERKGAVREASPAPLAQGEPGREDLPTRLPALGEAHVSPEVATADKAPLQAPPVLEVAAECEPDDLDLDY
GDSVEAGHVFDDFSSDAVFIQLDDMSSPPSPESTDSSPERDFPLKPALPPASLAVAAIQREVSLMHDEDP
SQPPPLPEGTQEPHLLRPDAAEKAEAPSSPDVAPAGKEDSPSASGRVQEAARPEEVVSQTPLLRSRALVK
RVTWNLQESESSAPAEDRAPRAPLHRPQKPREGAWDMEDVAPTGVRQVFSELPFPSHVLPEPGFPDTDPS
QVYSPGLPPAPAQPSSIPPCALVSQPTVQFILQGSLPLVGCGAAQTLAPVPAALTPASEPASQATAASNS
EEKTPAPRLAAEKTKKEEYMKKLHMQERAVEEVKLAIKPFYQKREVTKEEYKDILRKAVQKICHSKSGEI
NPVKVANLVKAYVDKYRHMRRHKKPEAGEEPPTQGAEG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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