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Report for CCDS44357.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44357.1 Public Homo sapiens 10 USP6NL 24 110 108 CCDS HistoryNCBI Gene:9712Re-query CCDS DB by CCDS ID:44357.1Re-query CCDS DB by GeneID:9712See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 44357.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000277575.5 ENSP00000277575.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000277575.5Link to Ensembl Protein Viewer:ENSP00000277575.5Re-query CCDS DB by Nucleotide ID:ENST00000277575Re-query CCDS DB by Protein ID:ENSP00000277575
Original member Current member NCBI NM_001080491.5 NP_001073960.1 Accepted alive Link to Nucleotide Sequence:NM_001080491.5Link to Protein Sequence:NP_001073960.1Re-query CCDS DB by Nucleotide ID:NM_001080491Re-query CCDS DB by Protein ID:NP_001073960Link to BLAST:NP_001073960.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073960.1 845 Q92738-2 845 100% 0 0

Chromosomal Locations for CCDS 44357.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 11462441 11463849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11481770 11481922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11484971 11485070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11485169 11485234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11485817 11485911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11489102 11489222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11490832 11490880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11493119 11493228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11501101 11501208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11509595 11509675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11518535 11518574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11525386 11525468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11527500 11527567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11532178 11532232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2538 nt):
ATGAGGACTGAAGCTGTTGTTAATTCCCAAGGCCAGACTGATTATCTCACAAAGGATTCAGACCAGGATG
TAGCACTCAAACTTGCCCAGGAGCGAGCTGAAATAGTTGCTAAATATGACAGAGGACGAGAAGGTGCAGA
GATTGAACCTTGGGAAGATGCTGATTACCTTGTTTACAAAGTCACAGATAGATTTGGCTTTTTACATGAG
GAGGAGCTCCCAGATCATAATGTGGCTGTGGAACGGCAAAAGCACCTGGAAATTGAAAGAACTACCAAAT
GGCTGAAAATGCTGAAAGGATGGGAAAAATACAAGAACACTGAAAAGTTTCATAGGCGAATTTACAAAGG
AATACCACTCCAGCTCAGAGGTGAAGTCTGGGCCCTCCTTCTTGAGATCCCTAAAATGAAAGAAGAAACA
AGGGACCTGTATAGTAAATTAAAACACAGAGCACGGGGCTGTTCACCTGACATCAGACAAATAGACCTGG
ATGTCAACCGCACATTTCGGGACCACATTATGTTTAGAGACAGATATGGTGTTAAGCAACAATCCTTATT
CCATGTGCTTGCTGCCTATTCTATTTATAACACGGAAGTCGGGTATTGTCAGGGGATGAGCCAGATCACA
GCTTTACTCCTCATGTATATGAACGAGGAAGATGCCTTCTGGGCCCTGGTCAAACTCTTCTCAGGCCCTA
AACATGCCATGCATGGCTTTTTTGTCCAAGGTTTTCCTAAACTCTTGAGGTTTCAAGAACATCATGAAAA
AATACTGAACAAATTTCTGTCCAAGCTTAAGCAACACTTGGATTCTCAAGAAATCTACACAAGTTTTTAC
ACAATGAAATGGTTTTTTCAGTGTTTCCTTGATCGTACTCCCTTTACACTAAACCTCAGAATATGGGATA
TCTACATCTTTGAAGGAGAACGAGTTCTTACTGCTATGTCTTACACCATCTTAAAATTACACAAAAAACA
TCTAATGAAATTGTCCATGGAAGAACTTGTAGAATTTTTTCAGGAGACCCTGGCAAAGGATTTTTTCTTT
GAAGATGATTTTGTGATAGAGCAACTTCAGATTTCTATGACAGAACTAAAGCGGGCAAAGTTAGACCTTC
CAGAACCTGGTAAAGAGGATGAATATCCAAAGAAGCCCTTGGGGCAGCTTCCACCTGAACTTCAGTCTTG
GGGCGTCCATCACTTGAGCAACGGACAGAGGAGCGTGGGCCGGCCGAGCCCGCTGGCCAGCGGCAGGAGG
GAGAGCGGGGCGCCCCACAGGAGGCACGAGCACTCCCCGCACCCCCAGAGCAGGACCGGGACGCCCGAGA
GAGCACAGCCGCCAAGACGGAAATCGGTGGAGGAGGAGAGCAAAAAGCTTAAAGATGAGGCAGATTTTCA
AAGAAAACTCCCATCGGGTCCACAGGACAGTTCCAGGCAATATAATCACGCAGCTGCCAACCAAAATAGC
AACGCCACTTCAAATATCAGGAAGGAGTTTGTGCCCAAATGGAATAAACCGTCAGACGTCTCAGCTACAG
AGAGAACTGCCAAATACACCATGGAAGGCAAAGGTCGAGCAGCGCACCCCGCGCTCGCAGTTACCGTCCC
AGGTCCTGCCGAGGTGCGGGTGTCAAACGTGCGGCCAAAGATGAAGGCCCTGGATGCTGAGGACGGGAAG
CGGGGCTCCACTGCATCGCAGTACGACAACGTGCCAGGCCCGGAGCTGGACAGCGGCGCTTCCGTGGAGG
AGGCGCTGGAAAGGGCTTACTCCCAGAGCCCCCGGCATGCCCTTTACCCTCCTAGCCCGAGAAAGCACGC
TGAGCCAAGTTCTAGTCCATCAAAAGTATCCAACAAGTTTACTTTTAAAGTACAGCCTCCAAGTCATGCA
CGATATCCGTCCCAGCTAGATGGGGAAGCCCGAGGGCTAGCTCATCCCCCCTCCTACAGCAATCCCCCCG
TTTACCACGGAAACTCTCCCAAACACTTCCCTACTGCCAACAGCAGCTTTGCTTCTCCACAGTTTAGCCC
TGGGACTCAACTGAATCCTTCCAGGAGACCTCATGGTTCTACTCTTTCCGTCAGTGCTTCTCCGGAGAAA
TCTTACAGCCGCCCAAGCCCCCTTGTACTGCCGTCTAGTCGAATAGAAGTCCTCCCTGTTGACACTGGTG
CTGGGGGATATTCGGGCAATTCAGGGTCACCAAAGAATGGAAAATTGATCATTCCACCAGTGGATTACTT
GCCAGATAACAGAACATGGTCAGAAGTTAGTTATACATACAGACCTGAGACGCAGGGACAATCATGGACC
CGAGATGCTAGCCGTGGCAATTTACCAAAATACTCAGCCTTTCAACTCGCACCCTTTCAGGACCATGGCC
TCCCTGCAGTTTCTGTAGATAGTCCCGTGAGATATAAAGCTTCACCGGCCGCAGAAGATGCCAGTCCATC
TGGATATCCATATTCAGGGCCCCCGCCTCCAGCCTACCACTACAGGAATCGGGACGGGCTTTCCATCCAA
GAGTCAGTGTTGCTGTGA

Translation (845 aa):
MRTEAVVNSQGQTDYLTKDSDQDVALKLAQERAEIVAKYDRGREGAEIEPWEDADYLVYKVTDRFGFLHE
EELPDHNVAVERQKHLEIERTTKWLKMLKGWEKYKNTEKFHRRIYKGIPLQLRGEVWALLLEIPKMKEET
RDLYSKLKHRARGCSPDIRQIDLDVNRTFRDHIMFRDRYGVKQQSLFHVLAAYSIYNTEVGYCQGMSQIT
ALLLMYMNEEDAFWALVKLFSGPKHAMHGFFVQGFPKLLRFQEHHEKILNKFLSKLKQHLDSQEIYTSFY
TMKWFFQCFLDRTPFTLNLRIWDIYIFEGERVLTAMSYTILKLHKKHLMKLSMEELVEFFQETLAKDFFF
EDDFVIEQLQISMTELKRAKLDLPEPGKEDEYPKKPLGQLPPELQSWGVHHLSNGQRSVGRPSPLASGRR
ESGAPHRRHEHSPHPQSRTGTPERAQPPRRKSVEEESKKLKDEADFQRKLPSGPQDSSRQYNHAAANQNS
NATSNIRKEFVPKWNKPSDVSATERTAKYTMEGKGRAAHPALAVTVPGPAEVRVSNVRPKMKALDAEDGK
RGSTASQYDNVPGPELDSGASVEEALERAYSQSPRHALYPPSPRKHAEPSSSPSKVSNKFTFKVQPPSHA
RYPSQLDGEARGLAHPPSYSNPPVYHGNSPKHFPTANSSFASPQFSPGTQLNPSRRPHGSTLSVSASPEK
SYSRPSPLVLPSSRIEVLPVDTGAGGYSGNSGSPKNGKLIIPPVDYLPDNRTWSEVSYTYRPETQGQSWT
RDASRGNLPKYSAFQLAPFQDHGLPAVSVDSPVRYKASPAAEDASPSGYPYSGPPPPAYHYRNRDGLSIQ
ESVLL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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