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Report for CCDS44338.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44338.1 Public Homo sapiens 1 CEP170 24 110 108 CCDS HistoryNCBI Gene:9859Re-query CCDS DB by CCDS ID:44338.1Re-query CCDS DB by GeneID:9859See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44338.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000366543.5 ENSP00000355501.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000366543.5Link to Ensembl Protein Viewer:ENSP00000355501.1Re-query CCDS DB by Nucleotide ID:ENST00000366543Re-query CCDS DB by Protein ID:ENSP00000355501
Original member Current member NCBI NM_001042405.2 NP_001035864.1 Accepted alive Link to Nucleotide Sequence:NM_001042405.2Link to Protein Sequence:NP_001035864.1Re-query CCDS DB by Nucleotide ID:NM_001042405Re-query CCDS DB by Protein ID:NP_001035864Link to BLAST:NP_001035864.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035864.1 1460 Q5SW79-2 1460 100% 0 0

Chromosomal Locations for CCDS 44338.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 243126449 243126738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 243128249 243128300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 243129360 243129453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 243136143 243136231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 243139937 243140107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 243142286 243142463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 243156221 243156347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 243164284 243166116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 243169628 243169754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 243172697 243172846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 243186259 243186422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 243191018 243191494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 243199060 243199194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 243200518 243200680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 243200777 243200835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 243211886 243211964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 243221724 243221813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 243225176 243225280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4383 nt):
ATGAGCTTAACATCCTGGTTTTTGGTGAGCAGTGGAGGCACTCGCCACAGGCTGCCACGAGAAATGATTT
TTGTTGGAAGAGATGACTGTGAGCTCATGTTGCAGTCTCGTAGTGTGGATAAGCAACACGCTGTCATCAA
CTATGATGCGTCTACGGATGAGCATTTAGTGAAGGATTTGGGCAGCCTCAATGGGACTTTTGTGAATGAT
GTAAGGATTCCGGAACAGACTTATATCACCTTGAAACTTGAAGATAAGCTGAGATTTGGATATGATACAA
ATCTTTTCACTGTAGTACAAGGAGAAATGAGGGTCCCTGAAGAAGCTCTTAAGCATGAGAAGTTTACCAT
TCAGCTTCAGTTGTCCCAAAAATCTTCAGAATCAGAATTATCCAAATCTGCAAGTGCCAAAAGCATAGAT
TCAAAGGTAGCAGACGCTGCTACTGAAGTGCAGCACAAAACTACTGAAGCACTGAAATCCGAGGAAAAAG
CCATGGATATTTCTGCTATGCCCCGTGGTACTCCATTATATGGGCAGCCGTCATGGTGGGGGGATGATGA
GGTGGATGAAAAAAGAGCTTTCAAGACAAATGGCAAACCTGAAGAAAAAAACCATGAAGCTGGAACATCA
GGGTGCGGCATAGATGCCAAGCAAGTTGAGGAACAATCTGCAGCTGCAAATGAAGAAGTACTTTTTCCTT
TCTGTAGGGAACCAAGTTATTTTGAAATCCCTACAAAAGAATTCCAGCAACCATCACAAATAACAGAAAG
CACTATTCATGAAATCCCAACAAAAGACACGCCAAGTTCCCATATAACAGGTGCAGGGCATGCTTCATTT
ACCATTGAATTTGATGACAGTACCCCAGGGAAGGTAACTATTAGAGACCATGTGACAAAGTTTACTTCTG
ATCAGCGCCACAAGTCCAAGAAGTCTTCTCCTGGAACTCAAGACTTGCTGGGGATTCAAACAGGAATGAT
GGCACCCGAAAACAAAGTTGCTGACTGGCTAGCACAAAACAACCCTCCTCAAATGCTATGGGAAAGAACA
GAAGAGGATTCTAAAAGCATTAAAAGTGATGTTCCAGTGTACTTGAAAAGGTTGAAAGGAAATAAACATG
ATGATGGTACGCAAAGTGATTCAGAGAACGCTGGGGCTCACAGGCGCTGTAGCAAACGTGCAACTCTTGA
GGAACACTTAAGACGCCACCATTCAGAACACAAAAAGCTACAGAAGGTCCAGGCTACTGAAAAGCATCAA
GACCAAGCTGTTGTGTTTGGAGTAGATGACAATCAGGATTATAATAGGCCTGTTATCAACGAAAAACATA
AAGATCTAATAAAAGATTGGGCTCTCAGTTCTGCTGCAGCAGTAATGGAAGAAAGAAAACCACTGACTAC
ATCTGGATTTCACCACTCAGAGGAAGGCACATCTTCATCTGGAAGCAAACGTTGGGTTTCACAGTGGGCT
AGTTTGGCTGCCAATCATACAAGGCATGATCAAGAAGAAAGGATAATGGAATTTTCTGCACCTCTTCCTT
TAGAGAATGAGACAGAGATCAGTGAGTCTGGCATGACAGTGAGAAGTACTGGCTCTGCAACTTCCTTGGC
TAGCCAGGGAGAGAGAAGGAGACGAACTCTTCCCCAGCTTCCAAATGAAGAAAAGTCTCTTGAGAGCCAC
AGAGCAAAGGTTGTAACACAGAGGTCAGAGATAGGAGAAAAACAAGACACAGAACTTCAGGAGAAAGAAA
CACCTACACAGGTATACCAGAAAGATAAACAAGATGCTGACAGACCCTTGAGTAAAATGAACAGGGCAGT
AAATGGAGAGACTCTCAAAACTGGTGGAGATAATAAAACCCTACTTCACTTAGGCAGCTCTGCTCCTGGA
AAAGAGAAAAGTGAAACTGATAAGGAAACTTCTTTGGTAAAGCAAACATTAGCAAAACTTCAACAACAAG
AACAAAGGGAGGAGGCTCAGTGGACACCTACTAAATTGTCTTCCAAAAATGTTTCAGGTCAGACAGATAA
ATGTAGGGAGGAAACTTTTAAACAAGAATCACAACCTCCAGAAAAAAATTCAGGACATTCTACAAGCAAA
GGAGACAGAGTGGCACAAAGTGAGAGCAAGAGAAGAAAAGCTGAGGAAATTCTGAAAAGTCAGACTCCAA
AGGGAGGAGACAAGAAGGAATCCTCCAAGTCATTAGTGCGACAAGGGAGCTTCACTATAGAAAAACCCAG
CCCAAACATACCCATAGAACTTATTCCCCATATAAATAAACAGACTTCCTCTACTCCTTCTTCTTTAGCA
TTAACATCTGCAAGTAGAATACGAGAAAGAAGTGAGTCTTTGGATCCTGATTCTAGTATGGACACAACCC
TTATTCTAAAAGACACAGAAGCAGTAATGGCTTTTCTAGAAGCTAAACTACGTGAAGATAATAAAACTGA
TGAAGGACCAGATACTCCCAGTTATAATAGAGACAATTCTATTTCACCAGAATCTGATGTAGATACAGCT
AGTACAATCAGTCTGGTTACTGGAGAAACTGAAAGAAAGTCAACCCAAAAGCGAAAGAGTTTCACTAGCC
TCTATAAAGATAGGTGTTCCACAGGTTCTCCTTCCAAAGATGTTACAAAATCATCATCTTCAGGTGCTAG
GGAAAAAATGGAAAAGAAAACAAAAAGTCGTTCCACAGATGTGGGTTCAAGAGCAGATGGTCGTAAATTT
GTTCAGTCCAGTGGGAGAATAAGACAGCCCTCAGTAGACTTAACAGATGATGACCAAACCTCTAGTGTAC
CTCATTCTGCCATCTCTGATATTATGTCATCTGATCAAGAAACTTACTCTTGTAAACCTCATGGACGGAC
TCCACTTACCTCAGCTGATGAGCATGTACATTCCAAACTGGAAGGAAGTAAAGTAACGAAATCTAAGACT
TCTCCGGTGGTATCTGGTTCATCTAGTAAATCAACCACCCTTCCAAGGCCACGACCTACCAGGACTTCCC
TCTTGCGCAGAGCACGACTTGGTGAAGCTTCAGACAGTGAACTTGCTGATGCTGACAAAGCATCTGTTGC
TTCTGAAGTATCCACAACAAGTTCTACATCAAAACCTCCCACAGGAAGGCGTAACATCTCTCGGATTGAT
TTATTGGCTCAGCCTCGTAGAACACGACTTGGCTCACTGTCAGCTCGTAGTGACTCTGAAGCAACAATTT
CTAGAAGTAGTGCCTCTTCGAGGACCGCAGAAGCCATCATTAGAAGTGGAGCCAGACTAGTACCATCAGA
TAAATTTTCTCCTAGAATTAGAGCTAACAGTATCTCTCGACTCTCAGACTCCAAGGTCAAAAGTATGACC
TCAGCTCATGGCTCTGCTTCAGCCCTGAAAACCACTCGCTTGCAGAGCGCTGGATCAGCAATGCCTACTA
GTTCTTCATTCAAACACCGGATTAAAGAGCAGGAAGACTACATCCGAGATTGGACTGCTCATCGAGAAGA
GATAGCCAGGATCAGCCAAGATCTTGCTCTCATTGCTCGGGAGATCAACGATGTAGCAGGAGAGATAGAT
TCAGTGACTTCATCAGGCACTGCCCCTAGTACCACAGTAAGCACTGCTGCCACCACCCCTGGCTCTGCCA
TAGACACTAGAGAAGAGGTAGGAGATCTTCATGGAGAAATGCATAAGTTGGTTGATCGTGTTTTTGATGA
AAGCCTCAACTTCCGAAAGATTCCTCCATTAGTTCATTCCAAAACACCAGAAGGAAACAACGGTCGATCT
GGTGATCCAAGACCTCAAGCAGCAGAGCCTCCCGATCACTTAACAATTACAAGGCGGAGAACCTGGAGCA
GGGATGAAGTCATGGGAGATAATCTGCTGCTGTCATCCGTCTTTCAGTTCTCTAAGAAGATAAGACAATC
TATAGATAAGACAGCTGGAAAGATCAGAATATTATTTAAAGACAAAGATCGGAATTGGGATGACATAGAA
AGCAAATTAAGAGCCGAAAGTGAAGTCCCTATTGTGAAAACCTCAAGCATGGAGATTTCTTCTATCTTAC
AGGAACTGAAAAGAGTAGAAAAGCAGCTGCAAGCAATCAATGCTATGATTGATCCTGATGGAACTTTGGA
GGCTCTGAACAACATGGGATTTCCCAGTGCTATGTTGCCATCTCCACCGAAACAGAAGTCCAGCCCTGTG
AATAACCACCACAGCCCGGGTCAGACACCAACACTTGGCCAACCAGAAGCTAGGGCTCTTCATCCTGCTG
CTGTTTCAGCCGCAGCTGAATTTGAGAATGCTGAATCTGAGGCTGATTTCAGTATACATTTCAATAGATT
CAACCCCGATGGGGAAGAGGAAGATGTTACAGTACAAGAATGA

Translation (1460 aa):
MSLTSWFLVSSGGTRHRLPREMIFVGRDDCELMLQSRSVDKQHAVINYDASTDEHLVKDLGSLNGTFVND
VRIPEQTYITLKLEDKLRFGYDTNLFTVVQGEMRVPEEALKHEKFTIQLQLSQKSSESELSKSASAKSID
SKVADAATEVQHKTTEALKSEEKAMDISAMPRGTPLYGQPSWWGDDEVDEKRAFKTNGKPEEKNHEAGTS
GCGIDAKQVEEQSAAANEEVLFPFCREPSYFEIPTKEFQQPSQITESTIHEIPTKDTPSSHITGAGHASF
TIEFDDSTPGKVTIRDHVTKFTSDQRHKSKKSSPGTQDLLGIQTGMMAPENKVADWLAQNNPPQMLWERT
EEDSKSIKSDVPVYLKRLKGNKHDDGTQSDSENAGAHRRCSKRATLEEHLRRHHSEHKKLQKVQATEKHQ
DQAVVFGVDDNQDYNRPVINEKHKDLIKDWALSSAAAVMEERKPLTTSGFHHSEEGTSSSGSKRWVSQWA
SLAANHTRHDQEERIMEFSAPLPLENETEISESGMTVRSTGSATSLASQGERRRRTLPQLPNEEKSLESH
RAKVVTQRSEIGEKQDTELQEKETPTQVYQKDKQDADRPLSKMNRAVNGETLKTGGDNKTLLHLGSSAPG
KEKSETDKETSLVKQTLAKLQQQEQREEAQWTPTKLSSKNVSGQTDKCREETFKQESQPPEKNSGHSTSK
GDRVAQSESKRRKAEEILKSQTPKGGDKKESSKSLVRQGSFTIEKPSPNIPIELIPHINKQTSSTPSSLA
LTSASRIRERSESLDPDSSMDTTLILKDTEAVMAFLEAKLREDNKTDEGPDTPSYNRDNSISPESDVDTA
STISLVTGETERKSTQKRKSFTSLYKDRCSTGSPSKDVTKSSSSGAREKMEKKTKSRSTDVGSRADGRKF
VQSSGRIRQPSVDLTDDDQTSSVPHSAISDIMSSDQETYSCKPHGRTPLTSADEHVHSKLEGSKVTKSKT
SPVVSGSSSKSTTLPRPRPTRTSLLRRARLGEASDSELADADKASVASEVSTTSSTSKPPTGRRNISRID
LLAQPRRTRLGSLSARSDSEATISRSSASSRTAEAIIRSGARLVPSDKFSPRIRANSISRLSDSKVKSMT
SAHGSASALKTTRLQSAGSAMPTSSSFKHRIKEQEDYIRDWTAHREEIARISQDLALIAREINDVAGEID
SVTSSGTAPSTTVSTAATTPGSAIDTREEVGDLHGEMHKLVDRVFDESLNFRKIPPLVHSKTPEGNNGRS
GDPRPQAAEPPDHLTITRRRTWSRDEVMGDNLLLSSVFQFSKKIRQSIDKTAGKIRILFKDKDRNWDDIE
SKLRAESEVPIVKTSSMEISSILQELKRVEKQLQAINAMIDPDGTLEALNNMGFPSAMLPSPPKQKSSPV
NNHHSPGQTPTLGQPEARALHPAAVSAAAEFENAESEADFSIHFNRFNPDGEEEDVTVQE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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