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Report for CCDS44249.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44249.1 Public Homo sapiens 1 LRRC71 24 110 108 CCDS HistoryNCBI Gene:149499Re-query CCDS DB by CCDS ID:44249.1Re-query CCDS DB by GeneID:149499See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44249.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000337428.8 ENSP00000336661.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000337428.8Link to Ensembl Protein Viewer:ENSP00000336661.7Re-query CCDS DB by Nucleotide ID:ENST00000337428Re-query CCDS DB by Protein ID:ENSP00000336661
Original member Current member NCBI NM_144702.3 NP_653303.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144702.3Link to Protein Sequence:NP_653303.2Re-query CCDS DB by Nucleotide ID:NM_144702Re-query CCDS DB by Protein ID:NP_653303Link to BLAST:NP_653303.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653303.2 559 Q8N4P6-1 559 100% 0 0

Chromosomal Locations for CCDS 44249.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 156920804 156920963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156923949 156924098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156924424 156924552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156924643 156924718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156924938 156925015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156927202 156927270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156927496 156927655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156927733 156927816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156927915 156928004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156929280 156929429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156929636 156929729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156930529 156930617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156931916 156932027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156932424 156932545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156932853 156932969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1680 nt):
ATGTCGAGCGAGCAGAGCGCGCCGGGGGCCTCACCCAGGGCCCCGCGTCCGGGGACCCAGAAGTCTTCTG
GCGCGGTGACCAAAAAGGGAGAGCGCGCGGCCAAAGAGAAGCCAGCGACCGTTCTGCCTCCCGTGGGGGA
GGAGGAGCCCAAAAGCCCTGAGGAGTACCAGTGCTCCGGGGTCCTCGAGACCGACTTCGCCGAGCTCTGC
ACGCGGTGGGGCTACACGGACTTCCCCAAAGTTGTCAACCGGCCCCGCCCCCACCCGCCCTTCGTCCCCT
CCGCCTCTTTGTCGGAAAAGGCCACCTTAGACGATCCGCGGCTGTCGGGGTCCTGCAGCCTCAATAGCCT
GGAGAGCAAATACGTGTTCTTCCGGCCCACCATCCAGGTGGAGCTGGAGCAGGAGGACAGCAAGTCAGTG
AAGGAAATCTACATCCGCGGTTGGAAGGTTGAGGAACGGATTCTGGGTGTCTTCTCTAAATGTCTGCCCC
CGCTTACCCAGCTACAGGCCATCAACTTGTGGAAGGTGGGGCTGACCGATAAGACCCTGACCACCTTCAT
CGAGCTCCTGCCTCTCTGTTCATCCACGCTCAGGAAGGTGTCTCTGGAGGGGAACCCACTGCCGGAGCAG
TCCTATCACAAGCTCATGGCCTTGGACAGCACGATTGCGCACTTGTCTCTGCGGAACAATAACATCGACG
ACCGCGGGGCGCAACTCCTGGGCCAGGCGCTGTCCACGCTGCACAGCTGCAACCGGACCCTCGTCTCGCT
CAACCTGGGTTTCAACCACATCGGTGACGAGGGCGCAGGCTACATCGCGGACGGCCTCCGGCTGAACCGT
TCCCTGCTCTGGCTGTCCCTGGCCCACAACCGCATCCAGGACAAGGGCGCCCTGAAGCTGGCTGAGGTCC
TGCGCGCCTTCGAGCTGACACACACCGAAGTGGTGGAGCGCCGACGCCTCCTGCTGGAAAAAGGGACACA
GGAGCGCTCGCGATCGCCCTCCTCCTCTCGACACGGGGACTCCAAAACGGACCGTGAGAAGAGTCAGATG
GTAGGGATCAGCAATAGTGCATTGGTGGACAAGACAGACAAGACGCAGACAATGAAAACCCCTAAGGGCC
TGGGCAAGAAAAAGGAGAAATCATGGGAATTGGCCAAGAAAGAGGAGAAGTTGGGGTCTGGGCAGTCACC
CACACAAGGAACCCCTAAGAAGGAAGATGCCACAAAGGCAGGCAAGGGGAAGGTAACCATCCCTGAACAG
AAGCCAAGCAGGGCAAAAGGGATCAAGATCGGGAGCAGAGAGAAGCGCAGCATCCTCCTGGAGTCCGAGC
TGGTTGTTGAGGCTACTGAGGTGGTCAACCCTCTCCTGGAGCCTGTGGAGCACCGAGATGGGAAAGTTTT
CATGCCTGGGAACAAGGTCCTTTTGCACCTCAACCTCATCCGGAACCGCATCACAGAGGTGGGGCTGGAG
GGCTTCCTCGCCACGGTGCAGTATCAGATGCAGTTCTCCAAGGCCAAGAGTGCATCCAAGGGTCCAGTGG
GGCTGCTGTGGCTGTCCCTGGCTAAAAATTGCTTCGCCCCACAATGTCCTGCGTACGCCATAATCCAGGA
GCTGATGTTGCCAAGGGATCCCATCAAGGCCAAACTCAGGGAGGATGAGGCCATGGCATTCTTCCCCTAG

Translation (559 aa):
MSSEQSAPGASPRAPRPGTQKSSGAVTKKGERAAKEKPATVLPPVGEEEPKSPEEYQCSGVLETDFAELC
TRWGYTDFPKVVNRPRPHPPFVPSASLSEKATLDDPRLSGSCSLNSLESKYVFFRPTIQVELEQEDSKSV
KEIYIRGWKVEERILGVFSKCLPPLTQLQAINLWKVGLTDKTLTTFIELLPLCSSTLRKVSLEGNPLPEQ
SYHKLMALDSTIAHLSLRNNNIDDRGAQLLGQALSTLHSCNRTLVSLNLGFNHIGDEGAGYIADGLRLNR
SLLWLSLAHNRIQDKGALKLAEVLRAFELTHTEVVERRRLLLEKGTQERSRSPSSSRHGDSKTDREKSQM
VGISNSALVDKTDKTQTMKTPKGLGKKKEKSWELAKKEEKLGSGQSPTQGTPKKEDATKAGKGKVTIPEQ
KPSRAKGIKIGSREKRSILLESELVVEATEVVNPLLEPVEHRDGKVFMPGNKVLLHLNLIRNRITEVGLE
GFLATVQYQMQFSKAKSASKGPVGLLWLSLAKNCFAPQCPAYAIIQELMLPRDPIKAKLREDEAMAFFP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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