NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS44238.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44238.1 Public Homo sapiens 1 SLC50A1 24 110 108 CCDS HistoryNCBI Gene:55974Re-query CCDS DB by CCDS ID:44238.1Re-query CCDS DB by GeneID:55974See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44238.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000303343.12 ENSP00000306146.8 Accepted alive Link to Ensembl Transcript Viewer:ENST00000303343.12Link to Ensembl Protein Viewer:ENSP00000306146.8Re-query CCDS DB by Nucleotide ID:ENST00000303343Re-query CCDS DB by Protein ID:ENSP00000306146
Original member Current member NCBI NM_001122839.2 NP_001116311.1 Accepted alive Link to Nucleotide Sequence:NM_001122839.2Link to Protein Sequence:NP_001116311.1Re-query CCDS DB by Nucleotide ID:NM_001122839Re-query CCDS DB by Protein ID:NP_001116311Link to BLAST:NP_001116311.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001116311.1 167 Q9BRV3-3 167 100% 0 0

Chromosomal Locations for CCDS 44238.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 155135912 155135991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155136299 155136376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155136828 155136951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155137979 155138098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155138180 155138281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (504 nt):
ATGGAGGCGGGCGGCTTTCTGGACTCGCTCATTTACGGAGCATGCGTGGTCTTCACCCTTGGCATGTTCT
CCGCCGGCCTCTCGGACCTCAGGCACATGCGAATGACCCGGAGTGTGGACAACGTCCAGTTCCTGCCCTT
TCTCACCACGGAAGTCAACAACCTGGGCTGGCTGAGTTATGGGGCTTTGAAGGGAGACGGGATCCTCATC
GTCGTCAACACAGTGGGTGCTGCGCTTCAGACCCTGTATATCTTGGCATATCTGCATTACTGCCCTCGGA
AGGCTAAGGTGATTCAAACTAAATCAACCCAATGTCTCTCCTACCCACTCACCATTGCTACCCTTCTCAC
CTCTGCCTCCTGGTGCCTCTATGGGTTTCGACTCAGAGATCCCTATATCATGGTGTCCAACTTTCCAGGA
ATCGTCACCAGCTTTATCCGCTTCTGGCTTTTCTGGAAGTACCCCCAGGAGCAAGACAGGAACTACTGGC
TCCTGCAAACCTGA

Translation (167 aa):
MEAGGFLDSLIYGACVVFTLGMFSAGLSDLRHMRMTRSVDNVQFLPFLTTEVNNLGWLSYGALKGDGILI
VVNTVGAALQTLYILAYLHYCPRKAKVIQTKSTQCLSYPLTIATLLTSASWCLYGFRLRDPYIMVSNFPG
IVTSFIRFWLFWKYPQEQDRNYWLLQT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH