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Report for CCDS44200.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44200.1 Public Homo sapiens 1 TRIM45 24 110 108 CCDS HistoryNCBI Gene:80263Re-query CCDS DB by CCDS ID:44200.1Re-query CCDS DB by GeneID:80263See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44200.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369464.7 ENSP00000358476.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000369464.7Link to Ensembl Protein Viewer:ENSP00000358476.3Re-query CCDS DB by Nucleotide ID:ENST00000369464Re-query CCDS DB by Protein ID:ENSP00000358476
Original member Current member NCBI NM_001145635.2 NP_001139107.1 Accepted alive Link to Nucleotide Sequence:NM_001145635.2Link to Protein Sequence:NP_001139107.1Re-query CCDS DB by Nucleotide ID:NM_001145635Re-query CCDS DB by Protein ID:NP_001139107Link to BLAST:NP_001139107.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139107.1 562 Q9H8W5-2 562 100% 0 0

Chromosomal Locations for CCDS 44200.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 117112305 117112453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 117113359 117113485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 117115575 117115689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 117116616 117116745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 117118088 117118767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 117120714 117121201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1689 nt):
ATGTCAGAAAACAGAAAACCGCTGCTGGGCTTTGTAAGCAAACTCACTAGTGGGACTGCACTTGGGAACT
CAGGCAAGACTCACTGCCCCCTGTGCTTGGGGCTTTTCAAAGCCCCCAGGCTCTTGCCTTGTTTGCATAC
AGTTTGCACCACGTGTCTGGAGCAGCTGGAGCCCTTCTCAGTAGTGGACATCCGAGGGGGAGACTCTGAC
ACAAGCTCTGAGGGGTCAATATTCCAGGAACTCAAGCCACGAAGTCTGCAGTCGCAGATCGGCATCCTTT
GTCCTGTATGTGATGCTCAGGTGGACCTGCCCATGGGTGGAGTGAAGGCTTTAACCATAGACCACCTGGC
CGTGAATGATGTGATGCTGGAGAGCCTACGTGGGGAAGGCCAGGGCCTGGTGTGTGACCTGTGCAACGAC
AGGGAAGTAGAGAAGAGGTGTCAGACCTGCAAAGCCAACCTCTGCCACTTCTGCTGCCAGGCTCATAGGC
GGCAGAAGAAAACGACTTACCACACCATGGTGGACCTAAAAGACTTGAAAGGCTACAGCCGGATTGGGAA
GCCCATCCTGTGTCCTGTTCACCCTGCAGAGGAACTGAGGCTGTTCTGTGAGTTCTGTGACCGGCCCGTG
TGCCAGGATTGTGTGGTGGGGGAGCATCGGGAACACCCCTGTGACTTCACCAGCAATGTCATCCACAAGC
ATGGGGACTCTGTGTGGGAGCTCCTCAAAGGTACTCAGCCCCACGTGGAGGCCCTGGAGGAAGCCCTGGC
TCAGATCCACATAATAAACAGTGCCCTCCAGAAGCGAGTGGAGGCAGTGGCAGCTGATGTCCGGACATTC
TCGGAGGGCTACATTAAGGCCATTGAGGAGCATCGGGACAAGCTGCTGAAGCAGCTGGAAGACATACGGG
CCCAGAAGGAAAATTCCCTGCAGCTGCAGAAGGCCCAGCTGGAACAGTTACTGGCAGACATGCGGACTGG
AGTGGAGTTCACCGAGCACTTGCTGACCAGCGGCTCAGACTTGGAGATCCTCATCACCAAGAGGGTGGTG
GTAGAACGGCTCAGGAAGCTGAACAAAGTTCAATATAGCACCCGTCCTGGAGTAAATGATAAGATACGCT
TCTGTCCTCAGGAGAAAGCAGGCCAGTGCCGTGGCTATGAAATTTATGACCTCCACAGAGCCCGGGAGAA
ACAGACGGCCTCTTTCACCCTGCTTTGTAAGGATGCCGCAGGAGAAATCATGGGCAGGGGAGGAGACAAC
GTTCAAGTTGCCGTTGTCCCTAAAGATAAGAAAGACAGCCCAGTCAGAACAATGGTCCAGGATAACAAGG
ATGGGACATACTACATTTCCTACACCCCCAAGGAACCTGGCGTCTATACTGTGTGGGTCTGCATCAAAGA
ACAGCATGTGCAGGGCTCGCCATTCACTGTGATGGTGAGGAGAAAGCACCGCCCACACTCAGGCGTGTTT
CACTGCTGCACCTTCTGCTCCAGCGGGGGCCAGAAAACCGCTCGCTGCGCCTGTGGAGGCACCATGCCAG
GTGGGTACCTAGGCTGTGGCCATGGACACAAAGGCCACCCAGGTCATCCCCACTGGTCATGCTGTGGAAA
ATTTAATGAGAAATCTGAATGCACATGGACAGGTGGGCAGAGCGCACCGAGGAGTCTACTTAGGACTGTG
GCTCTCTGA

Translation (562 aa):
MSENRKPLLGFVSKLTSGTALGNSGKTHCPLCLGLFKAPRLLPCLHTVCTTCLEQLEPFSVVDIRGGDSD
TSSEGSIFQELKPRSLQSQIGILCPVCDAQVDLPMGGVKALTIDHLAVNDVMLESLRGEGQGLVCDLCND
REVEKRCQTCKANLCHFCCQAHRRQKKTTYHTMVDLKDLKGYSRIGKPILCPVHPAEELRLFCEFCDRPV
CQDCVVGEHREHPCDFTSNVIHKHGDSVWELLKGTQPHVEALEEALAQIHIINSALQKRVEAVAADVRTF
SEGYIKAIEEHRDKLLKQLEDIRAQKENSLQLQKAQLEQLLADMRTGVEFTEHLLTSGSDLEILITKRVV
VERLRKLNKVQYSTRPGVNDKIRFCPQEKAGQCRGYEIYDLHRAREKQTASFTLLCKDAAGEIMGRGGDN
VQVAVVPKDKKDSPVRTMVQDNKDGTYYISYTPKEPGVYTVWVCIKEQHVQGSPFTVMVRRKHRPHSGVF
HCCTFCSSGGQKTARCACGGTMPGGYLGCGHGHKGHPGHPHWSCCGKFNEKSECTWTGGQSAPRSLLRTV
AL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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