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Report for CCDS44185.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44185.1 Public Homo sapiens 1 FNDC7 24 110 108 CCDS HistoryNCBI Gene:163479Re-query CCDS DB by CCDS ID:44185.1Re-query CCDS DB by GeneID:163479See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 44185.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370017.9 ENSP00000359034.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000370017.9Link to Ensembl Protein Viewer:ENSP00000359034.3Re-query CCDS DB by Nucleotide ID:ENST00000370017Re-query CCDS DB by Protein ID:ENSP00000359034
Original member Current member NCBI NM_001144937.3 NP_001138409.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001144937.3Link to Protein Sequence:NP_001138409.1Re-query CCDS DB by Nucleotide ID:NM_001144937Re-query CCDS DB by Protein ID:NP_001138409Link to BLAST:NP_001138409.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138409.1 733 Q5VTL7 733 100% 0 0

Chromosomal Locations for CCDS 44185.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 108712934 108712996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108713511 108713529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108717777 108718031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108718789 108719049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108722335 108722592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108725750 108726004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108727808 108728065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108728632 108728886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108730674 108730928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108733272 108733532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108737495 108737524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108741773 108741804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2202 nt):
ATGGCTGGTGGACGAGAGACATGTTTGCCTTTGATTGGATTCATTCTTATCTGTCTTAAAATGGTTGCTT
CAGCAAAATCAGCTCCTGAAATACCCACTATTGATCAGGCATATTCAAAACTCAGCAACAGTATCACTGT
AGAATGGGCTACAGTGCCGGGTGCCACCAGTTACCTCCTCACGGCTGAAGACGGGGACACAGTCATTGAA
ACCACGGTGGCCAATTCCCCAGGCACTGTGACGGGACTAAAGGCTGCAACCTGGTATGAAATCACCATCA
GATCCATCAGCGCTGCTGGGAGAAGCCAGGCGTCACCTCCAAAGCAGGCAAAGACAGTGTTGGCTGCACC
AATTCTAGAAGTAAGCTCTCCAAGTTCAGACTCCATTCTTGTGCAGTGGGAAGCTGTATATATGGCAATT
GCATTCTCCGTGTCCATTATGCGAGCCAATGGCTTGGGGAGTATATGGAAAGAGAATACTACAAACACCT
CCTTGACATTCACCAGTTTAGAAGCCGGAACTCTCTACACCATAAAGGCCTATGCATGGAATGCCAACAG
AATCCCTGGGGATGACTCCACCTGCAATCAGAGAACAAGTCCTCGGGCCCCTGCCAACATTCAAGTCTCT
TTCGATAGTGGAGCTCTGAAGGCATCTTTTTCCTGGGCACGGGCAGAAGGAGCTTTCAATTATACTGTGA
TGGCTTTGAGCGACTCTTCAGAGCTGACCTGCAGTACAACTTTCAGTTCCTGCACCATCTCTTCCCTCCA
GTGTGGAACTGAATACTTGATTTCAGTTTTAGCAAGTAATGATGCTGGATCTAGCAAATCATCTTCAGCA
ATGACCCTGAAAACTGTTGCTTGTGCACCCGGAAGAGTGACGATCCAAGAAGATCCCCCTGGCCACCTGT
CTGTGGCTTGGTCCAGTGTAGATCTGGGTGACTACTATGTGGTCTTTGTGAAGAGTGATGATGGCTTGGA
AGTACACTGCAACACATCTCTCACTCAGTGCAACTTCTTATCTGAGTGTGGCTTCACTTATTTTATTAGT
GTTTTTGTCTATAACAAGGCAGGGCAAAGTCCTTTGGGTGACATATTCAATTATACCACAGCTCCCTGTT
GTCCTAGTGACATTAACCCCGTGTTGGTGTCCAGTGACAGAGTTGAGATTGTCTGGTCTCCTGTCCGTGG
TGCCGAACTGTATGAAACCAAGGCTGTAGATGGGTACAACATGGTTGAGTGCAATGACACTACTCCTGCG
TGCACCCTTTCGGCTCTAGAGTGTGACACCAAGTACAACATCACAGTGTATTCATTCAATGAAGTCCGAG
GCAGCAATATGTCATGTACTCCCCAGTTCATAACCACAGCTCCTTGCAGTCCTGAAATAAAAAATGTTTC
AAGGGATGCATTCTCCATGATTAATGTGCACTGGCGATCCACTAATGATGATGCTACTTACACGGTGACT
GCCCAAGGGGAGAAAGGACTGTATCAGTGCAGCAGCACAGGAGAGTCCTGCACCATGCGGGGCTTGCCCT
GTGGCTCAGTGTTCTCTGTCACTGCTGTGGCCGAAACACAGGCAGGACGGAGCCTGCCCAGCTACAGTGT
GCCCCTGGAAACAGTGCCATGCTGTCCAACCGGTCTGACAGTAACTCAAATCACCCAGTCAGTAATCAAC
GTGAGCTGGACTATTGGGAGAGTGGCTCAAACCCATGTTGCAGTTCTGGAGTCACACACTGGACAGTCTA
AGTGTCACACTCATCAAAACCACTGCCTCCTAGGATGCATCACATGTGGCATCAATTACACAGTGACATT
AAAAGCAATTAGTGCCACCGGGTTGACTGCAGATTGCTCCTACCAAAGTTATTTCTCTGGTGCCTGCTGC
CCTTTGGGGGTGAAATTATATAGGCTGGGCCCTAATGGCATCCGGATCTACTGGCAAGCCTCCAGGGGCT
CTGCCAATTACAGCACTGACCTCTATGGCTCCAAAGGCATTTTCACGTGCACCCCGAGTGCTGGCCTCAG
TTTCTGTGATGTCACTGAGATACCCTGTGGGGATGTATACACTGTGATGGTCTCACCAGTTGCTAAAACA
GGATTGAAGCTTACTTTCTGTCCAAAAAAAATATATTCAGTAACTTGCTCTGGAAGTACACTTGGAATGG
TGATTTATAGAGGGAAGAGAAATGAAGAATGA

Translation (733 aa):
MAGGRETCLPLIGFILICLKMVASAKSAPEIPTIDQAYSKLSNSITVEWATVPGATSYLLTAEDGDTVIE
TTVANSPGTVTGLKAATWYEITIRSISAAGRSQASPPKQAKTVLAAPILEVSSPSSDSILVQWEAVYMAI
AFSVSIMRANGLGSIWKENTTNTSLTFTSLEAGTLYTIKAYAWNANRIPGDDSTCNQRTSPRAPANIQVS
FDSGALKASFSWARAEGAFNYTVMALSDSSELTCSTTFSSCTISSLQCGTEYLISVLASNDAGSSKSSSA
MTLKTVACAPGRVTIQEDPPGHLSVAWSSVDLGDYYVVFVKSDDGLEVHCNTSLTQCNFLSECGFTYFIS
VFVYNKAGQSPLGDIFNYTTAPCCPSDINPVLVSSDRVEIVWSPVRGAELYETKAVDGYNMVECNDTTPA
CTLSALECDTKYNITVYSFNEVRGSNMSCTPQFITTAPCSPEIKNVSRDAFSMINVHWRSTNDDATYTVT
AQGEKGLYQCSSTGESCTMRGLPCGSVFSVTAVAETQAGRSLPSYSVPLETVPCCPTGLTVTQITQSVIN
VSWTIGRVAQTHVAVLESHTGQSKCHTHQNHCLLGCITCGINYTVTLKAISATGLTADCSYQSYFSGACC
PLGVKLYRLGPNGIRIYWQASRGSANYSTDLYGSKGIFTCTPSAGLSFCDVTEIPCGDVYTVMVSPVAKT
GLKLTFCPKKIYSVTCSGSTLGMVIYRGKRNEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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