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Report for CCDS44180.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44180.1 Public Homo sapiens 1 NTNG1 24 110 108 CCDS HistoryNCBI Gene:22854Re-query CCDS DB by CCDS ID:44180.1Re-query CCDS DB by GeneID:22854See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44180.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370068.6 ENSP00000359085.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000370068.6Link to Ensembl Protein Viewer:ENSP00000359085.1Re-query CCDS DB by Nucleotide ID:ENST00000370068Re-query CCDS DB by Protein ID:ENSP00000359085
Original member Current member EBI ENST00000370073.6 ENSP00000359090.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000370073.6Link to Ensembl Protein Viewer:ENSP00000359090.2Re-query CCDS DB by Nucleotide ID:ENST00000370073Re-query CCDS DB by Protein ID:ENSP00000359090
Original member Current member NCBI NM_001113226.3 NP_001106697.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001113226.3Link to Protein Sequence:NP_001106697.1Re-query CCDS DB by Nucleotide ID:NM_001113226Re-query CCDS DB by Protein ID:NP_001106697Link to BLAST:NP_001106697.1
Original member Current member NCBI NM_001372167.1 NP_001359096.1 Accepted alive Link to Nucleotide Sequence:NM_001372167.1Link to Protein Sequence:NP_001359096.1Re-query CCDS DB by Nucleotide ID:NM_001372167Re-query CCDS DB by Protein ID:NP_001359096Link to BLAST:NP_001359096.1
Original member Current member NCBI NM_001372170.1 NP_001359099.1 Accepted alive Link to Nucleotide Sequence:NM_001372170.1Link to Protein Sequence:NP_001359099.1Re-query CCDS DB by Nucleotide ID:NM_001372170Re-query CCDS DB by Protein ID:NP_001359099Link to BLAST:NP_001359099.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001106697.1 539 Q9Y2I2-3 539 100% 0 0
NP_001359096.1 539 Q9Y2I2-3 539 100% 0 0
NP_001359099.1 539 Q9Y2I2-3 539 100% 0 0

Chromosomal Locations for CCDS 44180.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 107148594 107148839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 107324282 107324922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 107395154 107395326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 107407682 107407708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 107430750 107430917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 107436665 107436799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 107480611 107480840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1620 nt):
ATGTATTTGTCAAGATTCCTGTCGATTCATGCCCTTTGGGTTACGGTGTCCTCAGTGATGCAGCCCTACC
CTTTGGTTTGGGGACATTATGATTTGTGTAAGACTCAGATTTACACGGAAGAAGGGAAAGTTTGGGATTA
CATGGCCTGCCAGCCGGAATCCACGGACATGACAAAATATCTGAAAGTGAAACTCGATCCTCCGGATATT
ACCTGTGGAGACCCTCCTGAGACGTTCTGTGCAATGGGCAATCCCTACATGTGCAATAATGAGTGTGATG
CGAGTACCCCTGAGCTGGCACACCCCCCTGAGCTGATGTTTGATTTTGAAGGAAGACATCCCTCCACATT
TTGGCAGTCTGCCACTTGGAAGGAGTATCCCAAGCCTCTCCAGGTTAACATCACTCTGTCTTGGAGCAAA
ACCATTGAGCTAACAGACAACATAGTTATTACCTTTGAATCTGGGCGTCCAGACCAAATGATCCTGGAGA
AGTCTCTCGATTATGGACGAACATGGCAGCCCTATCAGTATTATGCCACAGACTGCTTAGATGCTTTTCA
CATGGATCCTAAATCCGTGAAGGATTTATCACAGCATACGGTCTTAGAAATCATTTGCACAGAAGAGTAC
TCAACAGGGTATACAACAAATAGCAAAATAATCCACTTTGAAATCAAAGACAGGTTCGCGTTTTTTGCTG
GACCTCGCCTACGCAATATGGCTTCCCTCTACGGACAGCTGGATACAACCAAGAAACTCAGAGATTTCTT
TACAGTCACAGACCTGAGGATAAGGCTGTTAAGACCAGCCGTTGGGGAAATATTTGTAGATGAGCTACAC
TTGGCACGCTACTTTTACGCGATCTCAGACATAAAGGTGCGAGGAAGGTGCAAGTGTAATCTCCATGCCA
CTGTATGTGTGTATGACAACAGCAAATTGACATGCGAATGTGAGCACAACACTACAGGTCCAGACTGTGG
GAAATGCAAGAAGAATTATCAGGGCCGACCTTGGAGTCCAGGCTCCTATCTCCCCATCCCCAAAGGCACT
GCAAATACCTGTATCCCCAGTATTTCCAGTATTGGTAATTGTGAATGCTTCGGCCACTCCAATCGATGCA
GTTATATCGATCTGCTAAATACAGTCATTTGCGTGAGCTGTAAACACAACACTAGAGGGCAGCACTGTGA
GTTATGCAGGCTGGGCTACTTCAGAAATGCTTCTGCACAACTGGACGATGAGAATGTGTGCATAGAGTGT
TATTGTAACCCTTTGGGCTCAATCCATGATCGTTGTAATGGCTCAGGATTTTGTGAGTGTAAGACTGGAA
CAACAGGGCCTAAGTGTGATGAGTGTCTGCCGGGAAATTCCTGGCACTACGGCTGTCAACCGAATGTCTG
CGACAACGAGCTCCTGCACTGCCAGAACGGAGGGACGTGCCACAACAACGTGCGCTGCCTGTGCCCGGCC
GCATACACGGGCATCCTCTGCGAGAAGCTGCGGTGCGAGGAGGCTGGCAGCTGCGGCTCCGACTCTGGCC
AGGGCGCGCCCCCGCACGGCTCCCCAGCGCTGCTGCTGCTGACCACGCTGCTGGGAACCGCCAGCCCCCT
GGTGTTCTAG

Translation (539 aa):
MYLSRFLSIHALWVTVSSVMQPYPLVWGHYDLCKTQIYTEEGKVWDYMACQPESTDMTKYLKVKLDPPDI
TCGDPPETFCAMGNPYMCNNECDASTPELAHPPELMFDFEGRHPSTFWQSATWKEYPKPLQVNITLSWSK
TIELTDNIVITFESGRPDQMILEKSLDYGRTWQPYQYYATDCLDAFHMDPKSVKDLSQHTVLEIICTEEY
STGYTTNSKIIHFEIKDRFAFFAGPRLRNMASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGEIFVDELH
LARYFYAISDIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGT
ANTCIPSISSIGNCECFGHSNRCSYIDLLNTVICVSCKHNTRGQHCELCRLGYFRNASAQLDDENVCIEC
YCNPLGSIHDRCNGSGFCECKTGTTGPKCDECLPGNSWHYGCQPNVCDNELLHCQNGGTCHNNVRCLCPA
AYTGILCEKLRCEEAGSCGSDSGQGAPPHGSPALLLLTTLLGTASPLVF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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