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Report for CCDS44178.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44178.1 Public Homo sapiens 1 RTCA 24 110 108 CCDS HistoryNCBI Gene:8634Re-query CCDS DB by CCDS ID:44178.1Re-query CCDS DB by GeneID:8634See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44178.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000260563.4 ENSP00000260563.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000260563.4Link to Ensembl Protein Viewer:ENSP00000260563.4Re-query CCDS DB by Nucleotide ID:ENST00000260563Re-query CCDS DB by Protein ID:ENSP00000260563
Original member Current member NCBI NM_001130841.2 NP_001124313.1 Accepted alive Link to Nucleotide Sequence:NM_001130841.2Link to Protein Sequence:NP_001124313.1Re-query CCDS DB by Nucleotide ID:NM_001130841Re-query CCDS DB by Protein ID:NP_001124313Link to BLAST:NP_001124313.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001124313.1 379 O00442-2 379 100% 0 0

Chromosomal Locations for CCDS 44178.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 100266376 100266420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 100266524 100266624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 100267500 100267538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 100268152 100268295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 100270557 100270680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 100273394 100273452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 100274824 100274965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 100275599 100275723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 100277258 100277316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 100285228 100285322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 100287099 100287203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 100291403 100291504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1140 nt):
ATGGCGGGGCCGCGGGTGGAGGTCGATGGCAGCATCATGGAAGGGGGCGGCCAGATCCTGAGAGTCTCTA
CGGCCTTGAGCTGTCTCCTAGGCCTCCCCTTGCGGGTGCAGAAGATCCGAGCCGGCCGGAGCACGCCAGG
CCTGAGTTCTGGAGGCTGGAAGTCCAAGATCAAGGTCCTGACAAGGCCTCAACATTTATCTGGACTGGAA
ATGATTCGAGATTTGTGTGATGGGCAACTGGAGGGGGCAGAAATTGGCTCAACAGAAATAACCTTTACAC
CAGAGAAGATCAAAGGTGGAATCCACACAGCAGATACCAAGACAGCAGGGAGTGTGTGCCTCTTGATGCA
GGTCTCAATGCCGTGTGTTCTCTTTGCTGCTTCTCCATCAGAACTTCATTTGAAAGGTGGAACTAATGCT
GAAATGGCACCACAGATCGATTATACAGTGATGGTCTTCAAGCCAATTGTTGAAAAATTTGGTTTCATAT
TTAATTGTGACATTAAAACAAGGGGATATTACCCAAAAGGGGGTGGTGAAGTGATTGTTCGAATGTCACC
AGTTAAACAATTGAACCCTATAAATTTAACTGAGCGTGGCTGTGTGACTAAGATATATGGAAGAGCTTTC
GTTGCTGGTGTTTTGCCATTTAAAGTAGCAAAAGATATGGCAGCGGCAGCAGTTAGATGCATCAGAAAGG
AGATCCGGGATTTGTATGTTAACATCCAGCCTGTTCAAGAACCTAAAGACCAAGCATTTGGCAATGGAAA
TGGAATAATAATTATTGCTGAGACCTCCACTGGCTGTTTGTTTGCTGGATCATCGCTTGGTAAACGAGGT
GTAAATGCAGACAAAGTTGGAATTGAAGCTGCCGAAATGCTATTAGCAAATCTTAGACATGGTGGTACTG
TGGATGAGTATCTGCAAGACCAGCTGATTGTTTTCATGGCATTAGCCAATGGAGTTTCCAGAATAAAAAC
AGGACCAGTTACACTCCATACGCAAACCGCGATACATTTTGCTGAACAAATAGCAAAGGCTAAATTTATT
GTGAAGAAATCAGAAGATGAAGAAGACGCCGCTAAAGATACTTATATTATTGAATGCCAAGGAATTGGGA
TGACAAATCCAAATCTATAG

Translation (379 aa):
MAGPRVEVDGSIMEGGGQILRVSTALSCLLGLPLRVQKIRAGRSTPGLSSGGWKSKIKVLTRPQHLSGLE
MIRDLCDGQLEGAEIGSTEITFTPEKIKGGIHTADTKTAGSVCLLMQVSMPCVLFAASPSELHLKGGTNA
EMAPQIDYTVMVFKPIVEKFGFIFNCDIKTRGYYPKGGGEVIVRMSPVKQLNPINLTERGCVTKIYGRAF
VAGVLPFKVAKDMAAAAVRCIRKEIRDLYVNIQPVQEPKDQAFGNGNGIIIIAETSTGCLFAGSSLGKRG
VNADKVGIEAAEMLLANLRHGGTVDEYLQDQLIVFMALANGVSRIKTGPVTLHTQTAIHFAEQIAKAKFI
VKKSEDEEDAAKDTYIIECQGIGMTNPNL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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