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Report for CCDS4409.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4409.1 Public Homo sapiens 5 ZNF346 24 110 108 CCDS HistoryNCBI Gene:23567Re-query CCDS DB by CCDS ID:4409.1Re-query CCDS DB by GeneID:23567See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4409.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000358149.8 ENSP00000350869.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000358149.8Link to Ensembl Protein Viewer:ENSP00000350869.3Re-query CCDS DB by Nucleotide ID:ENST00000358149Re-query CCDS DB by Protein ID:ENSP00000350869
Original member Current member NCBI NM_012279.4 NP_036411.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_012279.4Link to Protein Sequence:NP_036411.1Re-query CCDS DB by Nucleotide ID:NM_012279Re-query CCDS DB by Protein ID:NP_036411Link to BLAST:NP_036411.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036411.1 294 Q9UL40-1 294 100% 0 0

Chromosomal Locations for CCDS 4409.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 177022739 177022913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 177041126 177041229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 177041778 177041870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 177044389 177044533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 177050751 177050936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 177062058 177062151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 177064512 177064599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (885 nt):
ATGGAGTATCCCGCGCCGGCCACGGTGCAGGCCGCGGACGGCGGAGCGGCCGGGCCTTACAGCAGCTCGG
AGTTGCTGGAGGGCCAGGAGCCGGACGGGGTGCGCTTTGACCGCGAGAGGGCGCGCCGCCTGTGGGAAGC
CGTGTCCGGTGCCCAGCCGGTGGGTAGAGAGGAAGTGGAGCACATGATCCAGAAGAACCAATGTCTCTTC
ACCAACACCCAGTGTAAGGTTTGCTGCGCCTTGCTTATTTCTGAGTCCCAGAAGCTGGCACATTACCAGA
GCAAAAAACATGCCAACAAAGTGAAGAGATACCTAGCAATCCATGGAATGGAGACATTAAAGGGGGAAAC
GAAGAAGCTAGACTCAGATCAGAAGAGCAGCAGAAGCAAAGACAAGAACCAGTGCTGCCCCATCTGTAAC
ATGACCTTTTCCTCCCCTGTCGTGGCCCAGTCGCACTACCTGGGGAAGACCCACGCAAAGAACTTAAAGC
TGAAGCAGCAGTCCACTAAGGTGGAAGCCTTGCACCAGAATAGAGAGATGATAGACCCAGACAAGTTCTG
CAGCCTCTGCCATGCAACTTTCAACGACCCTGTCATGGCTCAACAACATTATGTGGGCAAGAAACACAGA
AAACAGGAGACCAAGCTCAAACTAATGGCACGCTATGGGCGGCTGGCGGACCCTGCTGTCACTGACTTTC
CAGCTGGAAAGGGCTACCCCTGCAAAACATGTAAGATAGTGCTGAACTCCATAGAACAGTACCAAGCTCA
TGTCAGCGGCTTCAAACACAAGAACCAGTCACCAAAAACAGTGGCATCATCCCTGGGCCAGATTCCAATG
CAAAGGCAACCCATTCAGAAAGACTCAACCACCTTGGAAGACTAG

Translation (294 aa):
MEYPAPATVQAADGGAAGPYSSSELLEGQEPDGVRFDRERARRLWEAVSGAQPVGREEVEHMIQKNQCLF
TNTQCKVCCALLISESQKLAHYQSKKHANKVKRYLAIHGMETLKGETKKLDSDQKSSRSKDKNQCCPICN
MTFSSPVVAQSHYLGKTHAKNLKLKQQSTKVEALHQNREMIDPDKFCSLCHATFNDPVMAQQHYVGKKHR
KQETKLKLMARYGRLADPAVTDFPAGKGYPCKTCKIVLNSIEQYQAHVSGFKHKNQSPKTVASSLGQIPM
QRQPIQKDSTTLED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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