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Report for CCDS44065.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44065.1 Public Homo sapiens 1 SZRD1 24 110 108 CCDS HistoryNCBI Gene:26099Re-query CCDS DB by CCDS ID:44065.1Re-query CCDS DB by GeneID:26099See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44065.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000401088.9 ENSP00000383866.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000401088.9Link to Ensembl Protein Viewer:ENSP00000383866.4Re-query CCDS DB by Nucleotide ID:ENST00000401088Re-query CCDS DB by Protein ID:ENSP00000383866
Original member Current member NCBI NM_001114600.3 NP_001108072.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001114600.3Link to Protein Sequence:NP_001108072.1Re-query CCDS DB by Nucleotide ID:NM_001114600Re-query CCDS DB by Protein ID:NP_001108072Link to BLAST:NP_001108072.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001108072.1 152 Q7Z422-1 152 100% 0 0

Chromosomal Locations for CCDS 44065.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 16367258 16367308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16391375 16391424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16393228 16393482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16395038 16395140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (459 nt):
ATGGAAGATGAGGAGGTCGCTGAGAGCTGGGAAGAGGCGGCAGACAGCGGGGAAATAGACAGACGGTTGG
AAAAAAAACTGAAGATCACACAAAAAGAGAGCAGGAAATCCAAATCTCCTCCCAAAGTGCCCATTGTGAT
TCAGGACGATAGCCTTCCCGCGGGGCCCCCTCCACAGATCCGCATCCTCAAGAGGCCCACCAGCAACGGT
GTGGTCAGCAGCCCCAACTCCACCAGCAGGCCCACCCTTCCAGTCAAGTCCCTAGCACAGCGAGAGGCCG
AGTACGCCGAGGCCCGGAAGCGGATCCTGGGCAGCGCCAGCCCCGAGGAGGAGCAGGAGAAACCCATCCT
CGACAGGCCAACCAGGATCTCCCAACCCGAAGACAGCAGGCAGCCCAATAATGTGATCAGACAGCCTTTG
GGTCCTGATGGGTCTCAAGGCTTCAAACAGCGCAGATAA

Translation (152 aa):
MEDEEVAESWEEAADSGEIDRRLEKKLKITQKESRKSKSPPKVPIVIQDDSLPAGPPPQIRILKRPTSNG
VVSSPNSTSRPTLPVKSLAQREAEYAEARKRILGSASPEEEQEKPILDRPTRISQPEDSRQPNNVIRQPL
GPDGSQGFKQRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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