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Report for CCDS43883.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43883.2 Public Homo sapiens 9 SWI5 24 110 108 CCDS HistoryNCBI Gene:375757Re-query CCDS DB by CCDS ID:43883.2Re-query CCDS DB by GeneID:375757See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Non-AUG initiation codon

Sequence IDs included in CCDS 43883.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000608796.6 ENSP00000476650.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000608796.6Link to Ensembl Protein Viewer:ENSP00000476650.2Re-query CCDS DB by Nucleotide ID:ENST00000608796Re-query CCDS DB by Protein ID:ENSP00000476650
Original member Current member NCBI NM_001040011.2 NP_001035100.2 Accepted alive Link to Nucleotide Sequence:NM_001040011.2Link to Protein Sequence:NP_001035100.2Re-query CCDS DB by Nucleotide ID:NM_001040011Re-query CCDS DB by Protein ID:NP_001035100Link to BLAST:NP_001035100.2

Chromosomal Locations for CCDS 43883.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 128276341 128276402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128276587 128276755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128284510 128284631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128285939 128286033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128288652 128288716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. This works on the replacement symbol in the Translation Exceptions section also.

Translation Exceptions:
replace the symbol L (codon CTG) with M at amino acid position 1

Nucleotide Sequence (513 nt):
CTGGACCCTCTTGCGCCATTGAACCCCCTGATCCGGGGGCCTCGGACCCCAGGGCTCAGGAGATGGATCC
AGTCCCTGGCGCTCCTACTTCCCAACTGCTCCTCCTCCCGCATCCCCACAGTACCCCGTCCTCACAGCGG
GCTGTGGGTCCAATCAGACTTTCCCCTCGGATTCCTCTCTAGGACTGAACCAAGACTTACCCGAAGTTGC
CGCGGGGCCTTCCGATCCCCTAGGCCATTGCCCAAGTCTGGCCAGGCTGATGGGACCAGCGAGGAGTCTC
TGCACCTTGACATTCAGAAACTGAAGGAGAAGAGGGACATGCTGGACAAGGAGATCTCCCAGTTCGTATC
TGAAGGCTACAGTGTGGATGAACTGGAGGACCACATTACCCAGCTTCACGAGTACAATGACATCAAGGAT
GTGGGGCAGATGCTGATGGGCAAACTAGCTGTGATCCGAGGTGTCACCACCAAAGAGTTGTATCCAGAGT
TTGGGCTGGACATGAATGACTGA

Translation (170 aa):
MDPLAPLNPLIRGPRTPGLRRWIQSLALLLPNCSSSRIPTVPRPHSGLWVQSDFPLGFLSRTEPRLTRSC
RGAFRSPRPLPKSGQADGTSEESLHLDIQKLKEKRDMLDKEISQFVSEGYSVDELEDHITQLHEYNDIKD
VGQMLMGKLAVIRGVTTKELYPEFGLDMND


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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