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Report for CCDS43833.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43833.1 Public Homo sapiens 9 FOXD4L3 24 110 108 CCDS HistoryNCBI Gene:286380Re-query CCDS DB by CCDS ID:43833.1Re-query CCDS DB by GeneID:286380See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43833.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000342833.4 ENSP00000341961.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000342833.4Link to Ensembl Protein Viewer:ENSP00000341961.2Re-query CCDS DB by Nucleotide ID:ENST00000342833Re-query CCDS DB by Protein ID:ENSP00000341961
Original member Current member NCBI NM_199135.4 NP_954586.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_199135.4Link to Protein Sequence:NP_954586.4Re-query CCDS DB by Nucleotide ID:NM_199135Re-query CCDS DB by Protein ID:NP_954586Link to BLAST:NP_954586.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_954586.4 417 Q6VB84 417 100% 0 0

Chromosomal Locations for CCDS 43833.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 68302952 68304205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1254 nt):
ATGAACCTGCCAAGAGCTGAGCGCCTTCGCTCCACACCGCAGCGCAGCCTCCGGGACTCCGATGGGGAAG
ACGGTAAAATCGATGTCCTGGGAGAGGAGGAAGATGAAGACGAGGTGGAAGACGAGGAGGAGGCGGCGAG
CCAGCAGTTCCTAGAGCAGTCGCTCCAGCCGGGGCTGCAGGTGGCCCGGTGGGGCGGGGTTGCGCTTCCC
CGAGAGCACATCGAGGGCGGCGGCGGCCCGAGCGACCCCTCAGAGTTTGGCACCAAGTTCAGGGCACCGC
CAAGGTCTGCGGCGGCCTCTGAAGATGCCCGGCAGCCGGCAAAGCCCCCCTACTCGTACATCGCGCTCAT
CACCATGGCCATCCTGCAAAACCCGCACAAGCGCCTCACGCTCAGCGGCATCTGCGCCTTCATTAGTGGC
CGCTTCCCCTACTACCGCCGCAAGTTCCCCGCCTGGCAGAACAGCATCCGCCACAACCTCTCGCTGAACG
ACTGCTTCGTTAAGATCCCCCGCGAGCCGGGCCACCCAGGCAAGGGCAACTACTGGAGCCTGGACCCCGC
CTCCCAAGACATGTTCGACAATGGCAGCTTTCTCCGGCGTAGGAAGCGTTTCAAGCGCCACCAACTGACC
CCGGGAGCCCACCTGCCCCACCCCTTCCCTCTACCTGCTGCACACGCCGCCCTGCACAACCCCCGCCCAG
GCCCTCTGCTTGGGGCCCCTGCCCCGCCGCAGCCAGTCCCGGGGGCCTACCCCAACACCGCCCCCGGGAG
ACGCCCTTACGCTCTGCTGCACCCGCATCCTCTTCGCTACCTACTGCTCTCGGCCCCCGTCTATGCCGGG
GCACCGAAGAAAGCAGAAGGCGCGGCCCTGGCGACCCCGGCACCCTTCCCGTGCTGCAGCCCTCACTTGG
TCCTCAGCCTTGGGAGGAGGGCAAGGGTCTGGCGTCGCCACCGGGAGGCGGATGCATCTCTTTCAGCATT
GAGAGTATTATGCAAGGGGTCAGGGGAGCGGGTACAGGGGCTGCGCAGAATTTGTCCCCGACCGCGTGGA
GCTACTGCCACCTGCTCCAGCGACCATCAAGCCTGTTGCATCCCCAGACCGCTGCCCCTTTGCTGCAAGT
GTCCGCCGCCGCCGCTGCTCGGACAATTTTGCAGCAATAGCAGCAGCATCAGGAGGAGGACTGCGCCAAC
GGCTGCGCTCCCACCAAGGGCGCGGTGCTGGGCGGGCACCTGTCGGCCTCGTCGGCCCTGCTGA

Translation (417 aa):
MNLPRAERLRSTPQRSLRDSDGEDGKIDVLGEEEDEDEVEDEEEAASQQFLEQSLQPGLQVARWGGVALP
REHIEGGGGPSDPSEFGTKFRAPPRSAAASEDARQPAKPPYSYIALITMAILQNPHKRLTLSGICAFISG
RFPYYRRKFPAWQNSIRHNLSLNDCFVKIPREPGHPGKGNYWSLDPASQDMFDNGSFLRRRKRFKRHQLT
PGAHLPHPFPLPAAHAALHNPRPGPLLGAPAPPQPVPGAYPNTAPGRRPYALLHPHPLRYLLLSAPVYAG
APKKAEGAALATPAPFPCCSPHLVLSLGRRARVWRRHREADASLSALRVLCKGSGERVQGLRRICPRPRG
ATATCSSDHQACCIPRPLPLCCKCPPPPLLGQFCSNSSSIRRRTAPTAALPPRARCWAGTCRPRRPC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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