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Report for CCDS43784.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43784.1 Public Homo sapiens 9 GLIS3 24 110 108 CCDS HistoryNCBI Gene:169792Re-query CCDS DB by CCDS ID:43784.1Re-query CCDS DB by GeneID:169792See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43784.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381971.8 ENSP00000371398.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000381971.8Link to Ensembl Protein Viewer:ENSP00000371398.3Re-query CCDS DB by Nucleotide ID:ENST00000381971Re-query CCDS DB by Protein ID:ENSP00000371398
Original member Current member NCBI NM_001042413.2 NP_001035878.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001042413.2Link to Protein Sequence:NP_001035878.1Re-query CCDS DB by Nucleotide ID:NM_001042413Re-query CCDS DB by Protein ID:NP_001035878Link to BLAST:NP_001035878.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035878.1 930 Q8NEA6-2 930 100% 0 0

Chromosomal Locations for CCDS 43784.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 3828272 3828408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 3829310 3829492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 3856009 3856184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 3879427 3879595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 3898691 3898835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 3932360 3932470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 3937028 3937189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4117768 4118881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4125734 4125941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4286038 4286425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2793 nt):
ATGAATGGAAGATCATGCAGCATGAGTCTCCACCGGACATCGGGAACCCCACAGGGGCCTAGGATGGTCA
GTGGTCATCACATTCCTGCCATCCGAGCCCACTCCGGGACTCCTGGCCCCTCGCCCTGTGGCAGCACATC
GAGTCCCACTATGGCAAGCCTTGCTAACAACCTCCATCTCAAGATGCCCTCAGGAGGAGGGATGGCTCCT
CAGAACAACGTGGCTGAGAGCCGCATCCATCTGCCTGCCTTAAGCCCCAGGAGACAAATGCTCACCAATG
GGAAGCCGCGATTCCAGGTCACCCAGGCTGGAGGCATGTCAGGGTCACATACTTTAAAGCCAAAGCAGCA
GGAGTTTGGAAGCCCTTTTCCTCCAAATCCTGGGAAAGGGGCTCTTGGCTTTGGGCCTCAGTGCAAGTCC
ATTGGAAAAGGCAGCTGCAACAATCTAGTGGTCACCAGCAGTCCCATGATGGTTCAGCGACTGGGACTCA
TTTCACCTCCAGCAAGCCAGGTCTCTACAGCATGCAACCAGATCAGTCCTAGCTTACAGAGGGCAATGAA
TGCAGCCAACCTGAATATACCTCCTTCAGATACCAGGTCCCTTATTTCGCGTGAGTCTTTGGCGTCCACG
ACCTTGAGTCTGACGGAAAGTCAGTCGGCCTCAAGCATGAAGCAGGAGTGGTCCCAGGGCTACAGGGCCC
TCCCTTCGCTCTCCAACCACGGCTCTCAGAATGGCCTTGATCTAGGGGATCTCCTTAGCCTTCCTCCCGG
GACATCCATGTCCAGCAATAGTGTCTCTAACTCATTACCATCCTACCTTTTTGGCACGGAAAGTAGCCAC
TCTCCTTACCCTAGTCCTCGGCACTCATCCACCAGGTCCCACTCGGCCCGCTCCAAGAAGAGAGCGCTGT
CCTTGTCCCCGCTGTCCGATGGCATCGGGATAGATTTCAATACCATCATCCGCACGTCGCCCACGTCCTT
GGTGGCCTACATCAACGGGTCGAGGGCTTCGCCGGCCAACCTGTCCCCGCAGCCGGAGGTCTACGGGCAT
TTCCTGGGCGTGCGCGGCAGCTGCATTCCCCAGCCGCGCCCGGTGCCCGGCAGCCAGAAGGGCGTGCTGG
TGGCCCCTGGAGGCCTGGCGCTGCCGGCCTACGGCGAGGACGGGGCCCTGGAGCACGAGCGCATGCAACA
GCTGGAGCACGGCGGCCTGCAGCCAGGCCTGGTCAACCACATGGTGGTGCAGCATGGCCTGCCGGGCCCC
GACAGCCAGTCGGCCGGCCTGTTCAAGACCGAACGCCTGGAGGAGTTCCCGGGCAGCACCGTAGACCTAC
CCCCCGCGCCTCCGCTCCCTCCTCTGCCGCCGCCCCCAGGCCCCCCACCCCCTTACCATGCCCATGCGCA
CCTTCACCACCCGGAGCTCGGGCCCCACGCCCAGCAGCTGGCCTTGCCCCAGGCCACCCTGGACGACGAC
GGGGAGATGGACGGCATCGGGGGCAAGCATTGCTGCCGCTGGATCGACTGCAGCGCCCTGTACGACCAGC
AGGAGGAGCTCGTGCGGCACATCGAGAAGGTCCACATCGACCAGCGCAAAGGGGAGGACTTCACTTGCTT
CTGGGCCGGTTGCCCTCGAAGATACAAGCCCTTCAACGCCCGCTATAAACTGCTGATCCACATGAGAGTC
CACTCTGGGGAGAAGCCCAACAAGTGTACGTTTGAAGGTTGCGAGAAGGCCTTTTCAAGGCTTGAAAATC
TCAAGATCCACTTGCGGAGCCACACAGGCGAGAAGCCGTATTTGTGCCAGCATCCGGGTTGTCAGAAGGC
CTTCAGTAACTCCAGTGACCGCGCCAAACACCAGCGGACGCATCTGGACACCAAACCTTATGCTTGTCAA
ATTCCAGGATGTACCAAACGCTACACAGACCCAAGTTCCCTAAGAAAGCATGTGAAGGCACATTCTTCCA
AAGAGCAACAAGCAAGGAAAAAGTTGCGGTCCAGCACAGAGCTCCATCCAGACCTGCTCACAGATTGCCT
CACCGTGCAGTCCCTGCAGCCGGCCACTTCCCCTAGAGATGCTGCTGCTGAAGGGACCGTGGGACGCTCC
CCTGGACCCGGGCCTGACCTCTATTCAGCTCCCATTTTCTCCAGCAATTATTCAAGCCGAAGTGGAACAG
CTGCTGGGGCCGTACCACCCCCACATCCTGTCAGTCACCCTTCTCCAGGACATAATGTACAGGGGAGCCC
TCACAACCCCTCCTCCCAGTTACCTCCACTCACAGCTGTGGACGCAGGAGCTGAGAGGTTTGCACCTTCT
GCTCCATCTCCTCACCACATCAGCCCCCGGAGAGTTCCAGCTCCTTCTTCAATACTGCAAAGAACACAGC
CTCCCTATACCCAGCAGCCATCAGGTTCACACCTGAAGTCCTATCAGCCAGAAACAAACTCTTCTTTTCA
ACCAAATGGTATCCATGTCCATGGATTTTATGGGCAGCTGCAGAAGTTCTGTCCCCCACACTACCCCGAT
TCCCAGAGAATTGTGCCGCCTGTCAGCTCCTGCAGTGTGGTGCCTTCGTTTGAGGACTGCCTAGTCCCTA
CATCCATGGGCCAGGCCAGTTTTGATGTTTTCCACAGAGCCTTCTCGACTCACTCGGGCATTACAGTGTA
TGATTTACCTTCAAGTTCCTCGAGCCTCTTTGGGGAGTCTCTCCGCAGCGGGGCTGAAGATGCTACCTTC
TTGCAGATCAGCACCGTGGACCGCTGTCCTAGCCAGCTCTCCTCTGTCTACACCGAAGGCTAA

Translation (930 aa):
MNGRSCSMSLHRTSGTPQGPRMVSGHHIPAIRAHSGTPGPSPCGSTSSPTMASLANNLHLKMPSGGGMAP
QNNVAESRIHLPALSPRRQMLTNGKPRFQVTQAGGMSGSHTLKPKQQEFGSPFPPNPGKGALGFGPQCKS
IGKGSCNNLVVTSSPMMVQRLGLISPPASQVSTACNQISPSLQRAMNAANLNIPPSDTRSLISRESLAST
TLSLTESQSASSMKQEWSQGYRALPSLSNHGSQNGLDLGDLLSLPPGTSMSSNSVSNSLPSYLFGTESSH
SPYPSPRHSSTRSHSARSKKRALSLSPLSDGIGIDFNTIIRTSPTSLVAYINGSRASPANLSPQPEVYGH
FLGVRGSCIPQPRPVPGSQKGVLVAPGGLALPAYGEDGALEHERMQQLEHGGLQPGLVNHMVVQHGLPGP
DSQSAGLFKTERLEEFPGSTVDLPPAPPLPPLPPPPGPPPPYHAHAHLHHPELGPHAQQLALPQATLDDD
GEMDGIGGKHCCRWIDCSALYDQQEELVRHIEKVHIDQRKGEDFTCFWAGCPRRYKPFNARYKLLIHMRV
HSGEKPNKCTFEGCEKAFSRLENLKIHLRSHTGEKPYLCQHPGCQKAFSNSSDRAKHQRTHLDTKPYACQ
IPGCTKRYTDPSSLRKHVKAHSSKEQQARKKLRSSTELHPDLLTDCLTVQSLQPATSPRDAAAEGTVGRS
PGPGPDLYSAPIFSSNYSSRSGTAAGAVPPPHPVSHPSPGHNVQGSPHNPSSQLPPLTAVDAGAERFAPS
APSPHHISPRRVPAPSSILQRTQPPYTQQPSGSHLKSYQPETNSSFQPNGIHVHGFYGQLQKFCPPHYPD
SQRIVPPVSSCSVVPSFEDCLVPTSMGQASFDVFHRAFSTHSGITVYDLPSSSSSLFGESLRSGAEDATF
LQISTVDRCPSQLSSVYTEG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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