NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS43724.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43724.1 Public Homo sapiens 8 PEBP4 24 110 108 CCDS HistoryNCBI Gene:157310Re-query CCDS DB by CCDS ID:43724.1Re-query CCDS DB by GeneID:157310See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43724.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000256404.8 ENSP00000256404.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000256404.8Link to Ensembl Protein Viewer:ENSP00000256404.6Re-query CCDS DB by Nucleotide ID:ENST00000256404Re-query CCDS DB by Protein ID:ENSP00000256404
Original member Current member NCBI NM_001363233.2 NP_001350162.1 Accepted alive Link to Nucleotide Sequence:NM_001363233.2Link to Protein Sequence:NP_001350162.1Re-query CCDS DB by Nucleotide ID:NM_001363233Re-query CCDS DB by Protein ID:NP_001350162Link to BLAST:NP_001350162.1
Original member Current member NCBI NM_144962.3 NP_659399.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144962.3Link to Protein Sequence:NP_659399.2Re-query CCDS DB by Nucleotide ID:NM_144962Re-query CCDS DB by Protein ID:NP_659399Link to BLAST:NP_659399.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001350162.1 227 Q96S96 227 100% 0 0
NP_659399.2 227 Q96S96 227 100% 0 0

Chromosomal Locations for CCDS 43724.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 22713370 22713536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22724843 22724956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22727175 22727220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22817637 22817735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22920184 22920310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22927584 22927714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (684 nt):
ATGGGTTGGACAATGAGGCTGGTCACAGCAGCACTGTTACTGGGTCTCATGATGGTGGTCACTGGAGACG
AG
GATGAGAACAGCCCGTGTGCCCATGAGGCCCTCTTGGACGAGGACACCCTCTTTTGCCAGGGCCTTGA
A
GTTTTCTACCCAGAGTTGGGGAACATTGGCTGCAAGGTTGTTCCTGATTGTAACAACTACAGACAGAAG
ATC
ACCTCCTGGATGGAGCCGATAGTCAAGTTCCCGGGGGCCGTGGACGGCGCAACCTATATCCTGGTGA
TG
GTGGATCCAGATGCCCCTAGCAGAGCAGAACCCAGACAGAGATTCTGGAGACATTGGCTGGTAACAGA
T
ATCAAGGGCGCCGACCTGAAGAAAGGGAAGATTCAGGGCCAGGAGTTATCAGCCTACCAGGCTCCCTCC
CCA
CCGGCACACAGTGGCTTCCATCGCTACCAGTTCTTTGTCTATCTTCAGGAAGGAAAAGTCATCTCTC
TC
CTTCCCAAGGAAAACAAAACTCGAGGCTCTTGGAAAATGGACAGATTTCTGAACCGTTTCCACCTGGG
C
GAACCTGAAGCAAGCACCCAGTTCATGACCCAGAACTACCAGGACTCACCAACCCTCCAGGCTCCCAGA
GAA
AGGGCCAGCGAGCCCAAGCACAAAAACCAGGCGGAGATAGCTGCCTGCTAG


Translation (227 aa):
MGWTMRLVTAALLLGLMMVVTGDEDENSPCAHEALLDEDTLFCQGLEVFYPELGNIGCKVVPDCNNYRQK
I
TSWMEPIVKFPGAVD
GATYILVMVDPDAPSRAEPRQRFWRHWLVTDIKGADLKKGKIQGQELSAYQAPS
P
PAHSGFHRYQFFVYLQEGKVISLLPKENKTR
GSWKMDRFLNRFHLGEPEASTQFMTQNYQDSPTLQAPR
E
RASEPKHKNQAEIAAC




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser