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Report for CCDS43539.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43539.1 Public Homo sapiens 7 MAD1L1 24 110 108 CCDS HistoryNCBI Gene:8379Re-query CCDS DB by CCDS ID:43539.1Re-query CCDS DB by GeneID:8379See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43539.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000265854.12 ENSP00000265854.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000265854.12Link to Ensembl Protein Viewer:ENSP00000265854.7Re-query CCDS DB by Nucleotide ID:ENST00000265854Re-query CCDS DB by Protein ID:ENSP00000265854
Original member Current member EBI ENST00000399654.6 ENSP00000382562.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000399654.6Link to Ensembl Protein Viewer:ENSP00000382562.2Re-query CCDS DB by Nucleotide ID:ENST00000399654Re-query CCDS DB by Protein ID:ENSP00000382562
Original member Current member EBI ENST00000406869.5 ENSP00000385334.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000406869.5Link to Ensembl Protein Viewer:ENSP00000385334.1Re-query CCDS DB by Nucleotide ID:ENST00000406869Re-query CCDS DB by Protein ID:ENSP00000385334
Original member Current member NCBI NM_001013836.2 NP_001013858.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001013836.2Link to Protein Sequence:NP_001013858.1Re-query CCDS DB by Nucleotide ID:NM_001013836Re-query CCDS DB by Protein ID:NP_001013858Link to BLAST:NP_001013858.1
Original member Current member NCBI NM_001013837.2 NP_001013859.1 Accepted alive Link to Nucleotide Sequence:NM_001013837.2Link to Protein Sequence:NP_001013859.1Re-query CCDS DB by Nucleotide ID:NM_001013837Re-query CCDS DB by Protein ID:NP_001013859Link to BLAST:NP_001013859.1
Original member Current member NCBI NM_001304523.2 NP_001291452.1 Accepted alive Link to Nucleotide Sequence:NM_001304523.2Link to Protein Sequence:NP_001291452.1Re-query CCDS DB by Nucleotide ID:NM_001304523Re-query CCDS DB by Protein ID:NP_001291452Link to BLAST:NP_001291452.1
Original member Current member NCBI NM_003550.3 NP_003541.2 Accepted alive Link to Nucleotide Sequence:NM_003550.3Link to Protein Sequence:NP_003541.2Re-query CCDS DB by Nucleotide ID:NM_003550Re-query CCDS DB by Protein ID:NP_003541Link to BLAST:NP_003541.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001013858.1 718 Q9Y6D9-1 718 100% 0 0
NP_001013859.1 718 Q9Y6D9-1 718 100% 0 0
NP_001291452.1 718 Q9Y6D9-1 718 100% 0 0
NP_003541.2 718 Q9Y6D9-1 718 100% 0 0

Chromosomal Locations for CCDS 43539.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 1816070 1816228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 1898200 1898390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 1936687 1936897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 1957629 1957719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 1980453 1980541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 2002065 2002121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 2014502 2014642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 2069194 2069338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 2149152 2149238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 2213212 2213273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 2215885 2215999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 2216157 2216287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 2217962 2218043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 2219332 2219456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 2222575 2222754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 2225410 2225550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 2229984 2230133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2157 nt):
ATGGAAGACCTGGGGGAAAACACCATGGTTTTATCCACCCTGAGATCTTTGAACAACTTCATCTCTCAGC
GTGTGGAGGGAGGCTCTGGACTGGATATTTCTACCTCGGCCCCAGGTTCTCTGCAGATGCAGTACCAGCA
GAGCATGCAGCTGGAGGAAAGAGCAGAGCAGATCCGTTCGAAGTCCCACCTCATCCAGGTGGAGCGGGAG
AAAATGCAGATGGAGCTGAGTCACAAGAGGGCTCGAGTGGAGCTGGAGAGAGCAGCCAGCACCAGTGCCA
GGAACTACGAGCGTGAGGTCGACCGCAACCAGGAGCTCCTGACGCGCATCCGGCAGCTTCAGGAGCGGGA
GGCCGGGGCGGAGGAGAAGATGCAGGAGCAGCTGGAGCGCAACAGGCAGTGTCAGCAGAACTTGGATGCT
GCCAGCAAGAGGCTGCGTGAGAAAGAGGACAGTCTGGCCCAGGCTGGCGAGACCATCAACGCACTGAAGG
GGAGGATCTCGGAACTGCAGTGGAGCGTGATGGACCAGGAGATGCGGGTGAAGCGCCTGGAGTCGGAGAA
GCAGGAGCTGCAGGAGCAGCTGGACCTGCAACACAAAAAATGCCAGGAAGCCAATCAGAAAATCCAGGAA
CTCCAGGCCAGCCAAGAAGCAAGAGCAGACCACGAGCAGCAGATTAAGGATCTGGAGCAGAAGCTGTCCC
TGCAAGAGCAGGATGCAGCGATTGTGAAGAACATGAAGTCTGAGCTGGTACGGCTCCCTAGGCTGGAACG
GGAGCTGAAGCAGCTGCGGGAGGAGAGCGCGCACCTGCGGGAGATGAGAGAGACCAACGGGCTGCTCCAG
GAAGAGCTGGAAGGGCTGCAGAGGAAGCTGGGGCGCCAGGAGAAGATGCAGGAGACGCTGGTTGGCTTGG
AGCTGGAGAACGAGAGGCTGCTGGCCAAGCTGCAAAGCTGGGAGAGACTGGACCAGACCATGGGCCTGAG
CATCAGGACTCCAGAAGACCTTTCCAGATTCGTGGTTGAGCTGCAGCAGAGGGAGCTTGCCTTGAAGGAC
AAGAACAGCGCCGTCACCAGCAGCGCCCGGGGGCTGGAGAAGGCCAGGCAGCAGCTGCAGGAGGAGCTCC
GGCAGGTCAGCGGCCAGCTGTTGGAGGAGAGGAAGAAGCGCGAGACCCACGAGGCGCTGGCCCGGAGGCT
CCAGAAACGGGTCCTGCTGCTCACCAAGGAGCGGGACGGTATGCGGGCCATCCTGGGGTCCTACGACAGC
GAGCTGACCCCGGCCGAGTACTCACCCCAGCTGACGCGGCGCATGCGGGAGGCTGAGGATATGGTGCAGA
AGGTGCACAGCCACAGCGCCGAGATGGAGGCTCAGCTGTCGCAGGCCCTGGAGGAGCTGGGAGGCCAGAA
ACAAAGAGCAGACATGCTGGAGATGGAGCTGAAGATGCTGAAGTCTCAGTCCAGCTCTGCCGAACAGAGC
TTCCTGTTCTCCAGGGAGGAGGCGGACACGCTCAGGTTGAAGGTCGAGGAGCTGGAAGGCGAGCGGAGTC
GGCTGGAGGAGGAAAAGAGGATGCTGGAGGCACAGCTGGAGCGGCGAGCTCTGCAGGGTGACTATGACCA
GAGCAGGACCAAAGTGCTGCACATGAGCCTGAACCCCACCAGTGTGGCCAGGCAGCGCCTGCGCGAGGAC
CACAGCCAGCTGCAGGCGGAGTGCGAGCGACTGCGCGGGCTCCTGCGCGCCATGGAGAGAGGAGGCACCG
TCCCAGCCGACCTTGAGGCTGCCGCCGCGAGTCTGCCATCGTCCAAGGAGGTGGCAGAGCTGAAGAAGCA
GGTGGAGAGTGCCGAGCTGAAGAACCAGCGGCTCAAGGAGGTTTTCCAGACCAAGATCCAGGAGTTCCGC
AAGGCCTGCTACACGCTCACCGGCTACCAGATCGACATCACCACGGAGAACCAGTACCGGCTGACCTCGC
TGTACGCCGAGCACCCAGGCGACTGCCTCATCTTCAAGGCCACCAGCCCCTCGGGTTCCAAGATGCAGCT
ACTGGAGACAGAGTTCTCACACACCGTGGGCGAGCTCATCGAGGTGCACCTGCGGCGCCAGGACAGCATC
CCTGCCTTCCTCAGCTCGCTCACCCTCGAGCTCTTCAGCCGCCAGACCGTGGCGTAG

Translation (718 aa):
MEDLGENTMVLSTLRSLNNFISQRVEGGSGLDISTSAPGSLQMQYQQSMQLEERAEQIRSKSHLIQVERE
KMQMELSHKRARVELERAASTSARNYEREVDRNQELLTRIRQLQEREAGAEEKMQEQLERNRQCQQNLDA
ASKRLREKEDSLAQAGETINALKGRISELQWSVMDQEMRVKRLESEKQELQEQLDLQHKKCQEANQKIQE
LQASQEARADHEQQIKDLEQKLSLQEQDAAIVKNMKSELVRLPRLERELKQLREESAHLREMRETNGLLQ
EELEGLQRKLGRQEKMQETLVGLELENERLLAKLQSWERLDQTMGLSIRTPEDLSRFVVELQQRELALKD
KNSAVTSSARGLEKARQQLQEELRQVSGQLLEERKKRETHEALARRLQKRVLLLTKERDGMRAILGSYDS
ELTPAEYSPQLTRRMREAEDMVQKVHSHSAEMEAQLSQALEELGGQKQRADMLEMELKMLKSQSSSAEQS
FLFSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLRED
HSQLQAECERLRGLLRAMERGGTVPADLEAAAASLPSSKEVAELKKQVESAELKNQRLKEVFQTKIQEFR
KACYTLTGYQIDITTENQYRLTSLYAEHPGDCLIFKATSPSGSKMQLLETEFSHTVGELIEVHLRRQDSI
PAFLSSLTLELFSRQTVA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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