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Report for CCDS43524.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43524.1 Public Homo sapiens 6 PACRG 24 110 108 CCDS HistoryNCBI Gene:135138Re-query CCDS DB by CCDS ID:43524.1Re-query CCDS DB by GeneID:135138See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43524.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000366888.7 ENSP00000355854.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000366888.7Link to Ensembl Protein Viewer:ENSP00000355854.2Re-query CCDS DB by Nucleotide ID:ENST00000366888Re-query CCDS DB by Protein ID:ENSP00000355854
Original member Current member EBI ENST00000366889.6 ENSP00000355855.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000366889.6Link to Ensembl Protein Viewer:ENSP00000355855.2Re-query CCDS DB by Nucleotide ID:ENST00000366889Re-query CCDS DB by Protein ID:ENSP00000355855
Original member Current member NCBI NM_001080378.2 NP_001073847.1 Accepted alive Link to Nucleotide Sequence:NM_001080378.2Link to Protein Sequence:NP_001073847.1Re-query CCDS DB by Nucleotide ID:NM_001080378Re-query CCDS DB by Protein ID:NP_001073847Link to BLAST:NP_001073847.1
Original member Current member NCBI NM_001080379.2 NP_001073848.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080379.2Link to Protein Sequence:NP_001073848.1Re-query CCDS DB by Nucleotide ID:NM_001080379Re-query CCDS DB by Protein ID:NP_001073848Link to BLAST:NP_001073848.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073847.1 257 Q96M98-2 257 100% 0 0
NP_001073848.1 257 Q96M98-2 257 100% 0 0

Chromosomal Locations for CCDS 43524.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 162728236 162728391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 162814147 162814281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 163062150 163062321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 163089259 163089408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 163314827 163314987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (774 nt):
ATGGTGGCAGAAAAAGAGACCCTGAGCTTAAACAAATGCCCAGACAAGATGCCGAAGAGGACCAAGCTGC
TGGCACAACAGCCGCTCCCGGTGCACCAGCCTCACTCTCTGGTTTCTGAGGGTTTCACAGTCAAAGCCAT
GATGAAAAACTCAGTCGTGAGAGGCCCTCCAGCTGCAGGGGCATTTAAAGAAAGACCAACCAAGCCCACA
GCATTTCGAAAATTCTATGAGCGAGGTGACTTCCCAATTGCCCTTGAGCATGATTCGAAAGGAAACAAAA
TCGCCTGGAAGGTAGAAATTGAGAAGCTGGATTACCATCATTATCTGCCTCTGTTTTTTGATGGGCTTTG
TGAAATGACATTTCCCTATGAGTTTTTTGCTCGGCAAGGAATCCACGACATGCTGGAACACGGTGGGAAC
AAGATCCTACCTGTCCTTCCACAGCTCATTATCCCGATAAAAAATGCCTTGAACCTCCGAAACCGACAGG
TCATCTGTGTCACTCTCAAGGTCCTCCAGCATCTGGTTGTGTCAGCTGAGATGGTGGGCAAGGCCTTGGT
GCCTTATTACCGTCAAATCCTCCCTGTCCTGAACATCTTTAAGAATATGAATGTGAACTCCGGAGACGGC
ATTGACTACAGCCAGCAGAAGAGGGAGAACATTGGGGACTTGATCCAGGAGACACTGGAGGCCTTCGAGC
GCTACGGAGGAGAAAATGCCTTTATCAACATTAAGTACGTGGTCCCAACCTACGAGTCTTGCTTGCTAAA
CTAA

Translation (257 aa):
MVAEKETLSLNKCPDKMPKRTKLLAQQPLPVHQPHSLVSEGFTVKAMMKNSVVRGPPAAGAFKERPTKPT
AFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMTFPYEFFARQGIHDMLEHGGN
KILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAEMVGKALVPYYRQILPVLNIFKNMNVNSGDG
IDYSQQKRENIGDLIQETLEAFERYGGENAFINIKYVVPTYESCLLN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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