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Report for CCDS43498.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43498.1 Public Homo sapiens 6 CEP85L 24 110 108 CCDS HistoryNCBI Gene:387119Re-query CCDS DB by CCDS ID:43498.1Re-query CCDS DB by GeneID:387119See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43498.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368491.8 ENSP00000357477.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368491.8Link to Ensembl Protein Viewer:ENSP00000357477.3Re-query CCDS DB by Nucleotide ID:ENST00000368491Re-query CCDS DB by Protein ID:ENSP00000357477
Original member Current member NCBI NM_001042475.3 NP_001035940.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001042475.3Link to Protein Sequence:NP_001035940.1Re-query CCDS DB by Nucleotide ID:NM_001042475Re-query CCDS DB by Protein ID:NP_001035940Link to BLAST:NP_001035940.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035940.1 805 Q5SZL2-1 805 100% 0 0

Chromosomal Locations for CCDS 43498.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 118465405 118465568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118469072 118469303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118470537 118470644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118479871 118479921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118480396 118480513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118481779 118481933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118483706 118483858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118491686 118491865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118511298 118511415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118523802 118523920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118565529 118566316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118632453 118632611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118651197 118651269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2418 nt):
ATGTGGGGGCGCTTCCTGGCTCCGGAGGCCAGCGGCCGGGATAGCCCCGGCGGAGCCCGCAGCTTCCCTG
CCGGCCCAGATTATTCATCAGCATGGCTACCTGCTAATGAATCATTGTGGCAGGCCACAACTGTTCCATC
TAACCATCGAAATAACCATATCAGGAGACACAGTATAGCTTCTGACAGTGGAGACACTGGCATTGGAACT
TCCTGTTCTGATAGCGTGGAAGATCATTCAACTTCAAGTGGCACATTATCTTTTAAGCCTAGTCAATCAT
TGATTACTCTTCCTACTGCCCATGTGATGCCGTCTAATTCCAGCGCTTCAATTTCCAAACTTAGGGAATC
ATTGACACCAGATGGCTCAAAATGGAGTACAAGCCTCATGCAAACATTGGGAAACCACAGTAGGGGGGAG
CAGGACTCTTCCCTAGACATGAAGGACTTCCGGCCACTTCGGAAATGGTCATCTTTATCCAAACTCACTG
CCCCGGATAACTGTGGCCAGGGTGGCACTGTATGCAGAGAAGAGTCAAGGAATGGTTTGGAGAAGATAGG
GAAGGCTAAGGCTTTAACATCACAACTGAGGACAATTGGGCCTAGCTGTTTACATGATAGTATGGAGATG
CTTAGGTTAGAGGACAAGGAAATAAATAAAAAACGGTCATCAACTCTGGACTGCAAGTATAAATTTGAGA
GCTGTAGCAAGGAGGACTTTAGAGCCTCTTCCTCTACTCTTAGGAGACAGCCTGTAGACATGACATATAG
TGCCTTACCTGAAAGCAAGCCCATTATGACAAGCTCAGAGGCTTTTGAACCTCCAAAATATTTAATGCTT
GGTCAACAGGCAGTAGGTGGAGTTCCCATTCAGCCTTCCGTAAGGACTCAGATGTGGCTTACAGAGCAGC
TGCGGACAAATCCTTTGGAAGGTAGAAATACAGAGGATTCTTACAGTTTAGCTCCTTGGCAACAGCAGCA
AATTGAAGACTTTCGACAAGGAAGTGAAACACCAATGCAGGTTTTGACTGGATCATCTCGTCAAAGTTAT
TCACCTGGCTATCAGGATTTCAGTAAGTGGGAATCAATGTTGAAAATAAAAGAAGGACTTCTAAGGCAGA
AAGAAATTGTAATCGATCGGCAGAAGCAACAAATTACCCACCTGCATGAGAGGATAAGGGATAATGAATT
ACGGGCTCAACATGCCATGTTAGGACATTATGTAAATTGTGAGGATTCTTATGTGGCTAGTTTGCAGCCA
CAATATGAGAACACTTCACTCCAGACACCATTTTCAGAGGAATCAGTTTCCCATTCCCAACAAGGGGAAT
TTGAGCAAAAGCTTGCATCTACTGAGAAAGAAGTTTTACAGCTTAATGAGTTTCTCAAACAAAGACTAAG
CCTATTTAGTGAAGAGAAGAAGAAACTAGAGGAAAAACTTAAAACTAGAGATCGATACATCAGTAGTCTG
AAAAAGAAATGCCAGAAGGAATCTGAACAAAACAAAGAAAAGCAGAGAAGAATTGAGACCTTGGAAAAGT
ATCTGGCTGATCTTCCAACTCTAGATGATGTACAGAGTCAGAGTCTACAGCTGCAGATTCTGGAAGAAAA
AAATAAGAATTTACAAGAGGCTTTGATAGATACAGAAAAAAAACTTGAAGAGATCAAAAAGCAGTGTCAA
GATAAAGAGACACAGTTAATATGCCAGAAAAAGAAAGAAAAGGAGTTAGTAACTACCGTTCAGAGTTTGC
AACAAAAAGTAGAAAGATGCCTTGAAGATGGAATCCGCCTTCCCATGTTAGATGCAAAACAGCTTCAGAA
TGAAAATGATAATCTCAGACAACAAAATGAGACTGCTAGTAAGATAATAGACAGCCAACAAGATGAGATT
GACAGAATGATTTTAGAAATTCAGTCTATGCAAGGAAAGCTTTCTAAAGAGAAACTGACCACTCAAAAGA
TGATGGAAGAGCTGGAAAAGAAAGAAAGAAATGTACAGAGATTAACAAAAGCATTGCTTGAAAACCAAAG
ACAAACAGATGAGACATGCTCTTTATTGGATCAGGGCCAGGAACCTGACCAATCTAGGCAGCAGACAGTT
CTTTCCAAACGGCCACTATTTGATTTGACTGTGATTGATCAGCTGTTCAAGGAAATGTCCTGTTGTTTGT
TTGACTTGAAAGCATTGTGTAGTATTCTTAATCAGCGTGCTCAGGGCAAGGAGCCTAATCTTTCATTATT
ACTGGGAATAAGATCAATGAACTGTTCAGCTGAAGAGACTGAGAATGACCACAGCACAGAAACACTCACT
AAAAAGCTGTCAGATGTGTGCCAGTTACGAAGAGACATTGATGAATTAAGGACTACAATATCAGACCGCT
ATGCTCAGGACATGGGAGACAACTGCATTACTCAGTGA

Translation (805 aa):
MWGRFLAPEASGRDSPGGARSFPAGPDYSSAWLPANESLWQATTVPSNHRNNHIRRHSIASDSGDTGIGT
SCSDSVEDHSTSSGTLSFKPSQSLITLPTAHVMPSNSSASISKLRESLTPDGSKWSTSLMQTLGNHSRGE
QDSSLDMKDFRPLRKWSSLSKLTAPDNCGQGGTVCREESRNGLEKIGKAKALTSQLRTIGPSCLHDSMEM
LRLEDKEINKKRSSTLDCKYKFESCSKEDFRASSSTLRRQPVDMTYSALPESKPIMTSSEAFEPPKYLML
GQQAVGGVPIQPSVRTQMWLTEQLRTNPLEGRNTEDSYSLAPWQQQQIEDFRQGSETPMQVLTGSSRQSY
SPGYQDFSKWESMLKIKEGLLRQKEIVIDRQKQQITHLHERIRDNELRAQHAMLGHYVNCEDSYVASLQP
QYENTSLQTPFSEESVSHSQQGEFEQKLASTEKEVLQLNEFLKQRLSLFSEEKKKLEEKLKTRDRYISSL
KKKCQKESEQNKEKQRRIETLEKYLADLPTLDDVQSQSLQLQILEEKNKNLQEALIDTEKKLEEIKKQCQ
DKETQLICQKKKEKELVTTVQSLQQKVERCLEDGIRLPMLDAKQLQNENDNLRQQNETASKIIDSQQDEI
DRMILEIQSMQGKLSKEKLTTQKMMEELEKKERNVQRLTKALLENQRQTDETCSLLDQGQEPDQSRQQTV
LSKRPLFDLTVIDQLFKEMSCCLFDLKALCSILNQRAQGKEPNLSLLLGIRSMNCSAEETENDHSTETLT
KKLSDVCQLRRDIDELRTTISDRYAQDMGDNCITQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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